Jan1

FASTA

Metadata

Reference

Data

identifier	Jan1
alternative_identifiers	['poz262']
country	Poland
continent	Europe
region	central Europe
culture	Hunter-Gatherer
epoch	Mesolithic
group	HGC
comment	-
latitude	51.8445930480957
longitude	20.05550765991211
sex	M
site	Janisławice, Kuyavia
site_detail	-
mt_hg	U5b1b1
ychr_hg	-
year_from	-5644
year_to	-5374
date_detail	5644-5374 BC
bp	-
c14_lab_code	-
c14_sample_tag	-
c14_layer_tag	-
avg_coverage	-
sequence_source	reconstructed
reference	Chyleński et al. 2017. Late Danubian mitochondrial genomes shed light into the Neolithisation of Central Europe in the 5th millennium BC. BMC Evolutionary Biology, 17(1), ?. (link)
data_link	https://www.ncbi.nlm.nih.gov/popset/1162707264
ychr_snps	-
mitopathos	[{'allele': '12063T', 'position': 12063, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-ND4'], 'diseases': ['Recurrent pregnancy loss']}, {'allele': '11527T', 'position': 11527, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['ND4 mutation set found in a Multiple Sclerosis patient']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '13051A', 'position': 13051, 'status': 'Cfrm', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['LHON']}, {'allele': '150T', 'position': 150, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Longevity / Cervical Carcinoma / HPV infection risk']}, {'allele': '15170A', 'position': 15170, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-CYB'], 'diseases': ['EXIT']}, {'allele': '1612T', 'position': 1612, 'status': 'Reported (VUS)', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-TV'], 'diseases': ['LVNC (left ventricular noncompaction)']}, {'allele': '16189C', 'position': 16189, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Diabetes / Cardiomyopathy /cancer risk / mtDNA copy nbr / Metabolic Syndrome / Melanoma patients']}, {'allele': '16192T', 'position': 16192, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '3632T', 'position': 3632, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND1'], 'diseases': ['LHON']}, {'allele': '5460A', 'position': 5460, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-ND2'], 'diseases': ['AD / PD / LHON']}, {'allele': '7520A', 'position': 7520, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-TD'], 'diseases': ['Sporadic bilateral optic neuropathy']}, {'allele': '8078A', 'position': 8078, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CO2'], 'diseases': ['DEAF']}, {'allele': '9438A', 'position': 9438, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CO3'], 'diseases': ['LHON / gout']}]