AED_1108

FASTA

Metadata

Reference

Data

identifier	AED_1108
alternative_identifiers	['SAMEA104354380']
country	Germany
continent	Europe
region	central Europe
culture	Thuringian
epoch	Middle Ages
group	MAGe
comment	-
latitude	48.29240036010742
longitude	11.90530014038086
sex	F
site	Altenerding - Klettham
site_detail	spatha, belt, bag, vessel, glass
mt_hg	U4a2a
ychr_hg	-
year_from	355
year_to	532
date_detail	355 – 365 cal AD, 381 – 433 cal AD, 489 – 532 cal AD, 460 – 510 AD
bp	1601±19
c14_lab_code	-
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	214.58999633789062
sequence_source	bam
reference	Veeramah et al. 2018. Population genomic analysis of elongated skulls reveals extensive female-biased immigration in Early Medieval Bavaria. Proceedings of the National Academy of Sciences, 115(13), 3494-3499. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/SAMEA104354380
ychr_snps	-
mitopathos	[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '15693C', 'position': 15693, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CYB'], 'diseases': ['Possibly LVNC cardiomyopathy-associated']}, {'allele': '195C', 'position': 195, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['BD-associated / melanoma pts']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '499A', 'position': 499, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Endometriosis']}, {'allele': '8843C', 'position': 8843, 'status': 'Reported as Likely Benign', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ATP6'], 'diseases': ['Patient with suspected mitochondrial disease']}]