AED_1119

FASTA

Metadata

Reference

Data

identifier	AED_1119
alternative_identifiers	['SAMEA104354381']
country	Germany
continent	Europe
region	central Europe
culture	Alamannic-Frankish
epoch	Middle Ages
group	MAGe
comment	-
latitude	48.29240036010742
longitude	11.90530014038086
sex	F
site	Altenerding - Klettham
site_detail	spatha, belt, bag, vessel, glass
mt_hg	W1e1a
ychr_hg	-
year_from	510
year_to	530
date_detail	510 – 530 AD
bp	-
c14_lab_code	-
c14_sample_tag	-
c14_layer_tag	True
avg_coverage	255.74000549316406
sequence_source	bam
reference	Veeramah et al. 2018. Population genomic analysis of elongated skulls reveals extensive female-biased immigration in Early Medieval Bavaria. Proceedings of the National Academy of Sciences, 115(13), 3494-3499. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/SAMEA104354381
ychr_snps	-
mitopathos	[{'allele': '10398G', 'position': 10398, 'status': 'Reported / lineage L & M marker / also hg IJK', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND3'], 'diseases': ['PD protective factor / longevity / altered cell pH / metabolic syndrome / breast cancer risk / Leigh Syndrome risk / ADHD / cognitive decline / SCA2 age of onset / Fuchs endothelial corneal dystrophy']}, {'allele': '12705T', 'position': 12705, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CO1'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '195C', 'position': 195, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['BD-associated / melanoma pts']}, {'allele': '5460A', 'position': 5460, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-ND2'], 'diseases': ['AD / PD / LHON']}]