AED_249

FASTA

Metadata

Reference

Data

identifier AED_249
alternative_identifiers ['SAMEA104354385']
country Germany
continent Europe
region central Europe
culture Germany_EMA
epoch Middle Ages
group MAGe
comment -
latitude 48.29240036010742
longitude 11.90530014038086
sex M
site Altenerding - Klettham
site_detail spatha, belt, bag, vessel, glass
mt_hg T2c1d1a
ychr_hg -
year_from 460
year_to 510
date_detail 460 – 510 AD
bp -
c14_lab_code -
c14_sample_tag -
c14_layer_tag True
avg_coverage 263.8299865722656
sequence_source bam
reference Veeramah et al. 2018. Population genomic analysis of elongated skulls reveals extensive female-biased immigration in Early Medieval Bavaria. Proceedings of the National Academy of Sciences, 115(13), 3494-3499. (link)
data_link https://www.ebi.ac.uk/ena/data/view/SAMEA104354385
ychr_snps -
mitopathos [{'allele': '11251G', 'position': 11251, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-ND4'], 'diseases': ['Reduced risk of PD']}, {'allele': '146C', 'position': 146, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Absence of Endometriosis']}, {'allele': '15928A', 'position': 15928, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-TT'], 'diseases': ['Multiple Sclerosis / idiopathic repeat miscarriage / AD protection']}, {'allele': '4917G', 'position': 4917, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND2'], 'diseases': ['LHON / Insulin Resistance / AMD / NRTI-PN']}, {'allele': '5631A', 'position': 5631, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-TA'], 'diseases': ['Myopathy']}, {'allele': '6261A', 'position': 6261, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CO1'], 'diseases': ['Prostate Cancer / LHON']}]