AH4

FASTA

Metadata

Reference

Data

identifier	AH4
alternative_identifiers	['10035', 'AH4.SG']
country	Iran
continent	Asia
region	Middle East
culture	Iran_N
epoch	Neolithic
group	NEME
comment	dubious site location from Marshall JE, PhD thesis (http://etheses.dur.ac.uk/3547/1/Missing_Links.pdf)
latitude	34.18000030517578
longitude	48.16999816894531
sex	F
site	Tepe Abdul Hosein, Central Zagros
site_detail	-
mt_hg	T2c
ychr_hg	-
year_from	-8204
year_to	-7755
date_detail	8204-7755 calBCE (8832±41 BP, MAMS-25473)
bp	8832±41
c14_lab_code	MAMS-25473
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	-
sequence_source	fasta
reference	Broushaki et al. 2016. Early Neolithic genomes from the eastern Fertile Crescent. Science, 353(6298), 499-503. (link)
data_link	https://www.ncbi.nlm.nih.gov/nuccore/KX353760.1
ychr_snps	-
mitopathos	[{'allele': '11251G', 'position': 11251, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-ND4'], 'diseases': ['Reduced risk of PD']}, {'allele': '15928A', 'position': 15928, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-TT'], 'diseases': ['Multiple Sclerosis / idiopathic repeat miscarriage / AD protection']}, {'allele': '4917G', 'position': 4917, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND2'], 'diseases': ['LHON / Insulin Resistance / AMD / NRTI-PN']}, {'allele': '7023A', 'position': 7023, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-CO1'], 'diseases': ['MELAS-like syndrome']}, {'allele': '8932T', 'position': 8932, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ATP6'], 'diseases': ['Prostate tumor / Neuromuscular disorder']}]