ANI152
FASTA
Metadata
Reference
Data
| identifier | ANI152 |
|---|---|
| alternative_identifiers | ['VAR43'] |
| country | Bulgaria |
| continent | Europe |
| region | Balkans |
| culture | Bulgaria_Varna_Eneolithic1 |
| epoch | Copper Age |
| group | CABA |
| comment | - |
| latitude | 43.209999084472656 |
| longitude | 27.860000610351562 |
| sex | M |
| site | Varna |
| site_detail | - |
| mt_hg | U2 |
| ychr_hg | CT |
| year_from | -4683 |
| year_to | -4406 |
| date_detail | 4683-4406 calBCE [4683-4488 calBCE (5720±29 BP, OxA-13685), 4550-4406 calBCE (5662±27 BP, MAMS-15095)] |
| bp | 5720±29 |
| c14_lab_code | OxA-13685 |
| c14_sample_tag | True |
| c14_layer_tag | - |
| avg_coverage | - |
| sequence_source | bam |
| reference | Mathieson et al. 2018. The genomic history of southeastern Europe. Nature, 555(7695), 197-203. (link) |
| data_link | https://www.ebi.ac.uk/ena/data/view/PRJEB22652 |
| ychr_snps | ['CT:M5578:6619341C->A', 'CT:M5738:17909505G->A'] |
| mitopathos | [{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '150T', 'position': 150, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Longevity / Cervical Carcinoma / HPV infection risk']}, {'allele': '3275T', 'position': 3275, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-TL1'], 'diseases': ['Metabolic syndrome and polycystic ovary syndrome']}] |