ANI152

FASTA

Metadata

Reference

Data

identifier ANI152
alternative_identifiers ['VAR43']
country Bulgaria
continent Europe
region Balkans
culture Bulgaria_Varna_Eneolithic1
epoch Copper Age
group CABA
comment -
latitude 43.209999084472656
longitude 27.860000610351562
sex M
site Varna
site_detail -
mt_hg U2
ychr_hg CT
year_from -4683
year_to -4406
date_detail 4683-4406 calBCE [4683-4488 calBCE (5720±29 BP, OxA-13685), 4550-4406 calBCE (5662±27 BP, MAMS-15095)]
bp 5720±29
c14_lab_code OxA-13685
c14_sample_tag True
c14_layer_tag -
avg_coverage -
sequence_source bam
reference Mathieson et al. 2018. The genomic history of southeastern Europe. Nature, 555(7695), 197-203. (link)
data_link https://www.ebi.ac.uk/ena/data/view/PRJEB22652
ychr_snps ['CT:M5578:6619341C->A', 'CT:M5738:17909505G->A']
mitopathos [{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '150T', 'position': 150, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Longevity / Cervical Carcinoma / HPV infection risk']}, {'allele': '3275T', 'position': 3275, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-TL1'], 'diseases': ['Metabolic syndrome and polycystic ovary syndrome']}]