ANI153

FASTA

Metadata

Reference

Data

identifier ANI153
alternative_identifiers ['VAR44']
country Bulgaria
continent Europe
region Balkans
culture Bulgaria_Varna_Eneolithic1
epoch Copper Age
group CABA
comment -
latitude 43.209999084472656
longitude 27.860000610351562
sex M
site Varna
site_detail -
mt_hg U4
ychr_hg R1
year_from -4551
year_to -4374
date_detail 4551-4374 calBCE (5657±30 BP, OxA-13692)
bp 5657±30
c14_lab_code OxA-13692
c14_sample_tag True
c14_layer_tag -
avg_coverage -
sequence_source bam
reference Mathieson et al. 2018. The genomic history of southeastern Europe. Nature, 555(7695), 197-203. (link)
data_link https://www.ebi.ac.uk/ena/data/view/PRJEB22652
ychr_snps ['R1:M306:22750583C->A']
mitopathos [{'allele': '12063T', 'position': 12063, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-ND4'], 'diseases': ['Recurrent pregnancy loss']}, {'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}]