| identifier |
ANI159 |
| alternative_identifiers |
['VAR117-I', 'ANI159-ANI181'] |
| country |
Bulgaria |
| continent |
Europe |
| region |
Balkans |
| culture |
Bulgaria_Varna_Eneolithic2 |
| epoch |
Copper Age |
| group |
CABA |
| comment |
- |
| latitude |
43.209999084472656 |
| longitude |
27.860000610351562 |
| sex |
M |
| site |
Varna |
| site_detail |
- |
| mt_hg |
T2b2b |
| ychr_hg |
G2a2b2b |
| year_from |
-4711 |
| year_to |
-4530 |
| date_detail |
4711-4530 calBCE (5766±36 BP, OxA 13848) |
| bp |
5766±36 |
| c14_lab_code |
- |
| c14_sample_tag |
True |
| c14_layer_tag |
- |
| avg_coverage |
- |
| sequence_source |
bam |
| reference |
Mathieson et al. 2018. The genomic history of southeastern Europe. Nature, 555(7695), 197-203.
(link)
|
| data_link |
https://www.ebi.ac.uk/ena/data/view/PRJEB22652
|
| ychr_snps |
['G2a2b2:CTS9957:19170699C->T', 'G2a:M3397:21605685G->C', 'G2a:M3408:22109159G->C', 'G2:CTS2406:14294068C->T', 'G2:F1294:8545324T->A', 'G2:F3220:21637589G->C', 'G2:F3344:22697266G->A', 'G2:M3579:21147058A->G', 'G:CTS10026:19215139A->T', 'G:CTS11228:23023554C->A', 'G:CTS11529:23151673T->C', 'G:F1131:8240725C->T', 'G:L382:14469411C->A', 'G:L522:17533325A->C', 'G:M3450:6931141C->G', 'G:M3482:8454233G->A', 'G:M3485:8563874C->T', 'G:M3597:21865624G->A', 'G:P257:14432928G->A', 'G:PF3134:15275200C->G', 'G2a2b:L30:15604899C->T', 'G2:CTS4264:15528792T->C', 'G2:CTS6742:17088129G->C', 'G:CTS995:7132348G->C', 'G:CTS2125:14190447A->G', 'G:CTS5317:16203361G->C', 'G:CTS9710:19033112G->A', 'G:M3266:8422993T->A', 'G:M3464:7537950C->T', 'G:M3470:7830068T->C', 'G:M3471:7840218C->A', 'G:M3481:8387539G->A', 'G:CTS4479:15667235G->A', 'G:CTS12654:28658660G->T', 'G:CTS827:7038432C->G', 'G2a:CTS9318:18819146T->A', 'G2a:CTS11463:23122426G->A', 'G:CTS282:2871867A->G', 'G2a2b2b:F705:2659191T->C', 'G2a2b2b:CTS5434:16271769A->G', 'G2a2b2b:F1581:9646643G->C', 'G2a2b2b:F1760:14323704T->C', 'G2a2b2b:F2419:17192221G->A', 'G2a2b2b:PF3359:7877472G->A', 'G2a2b2b:F1175:8399197G->A', 'G2a2b2b:F1429:8841269G->T', 'G2a2b2b:PF3413:19399866T->C', 'G2a2b2b:PF3404:17632283G->A']
|
| mitopathos |
[{'allele': '11251G', 'position': 11251, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-ND4'], 'diseases': ['Reduced risk of PD']}, {'allele': '16093C', 'position': 16093, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Cyclic Vomiting Syndrome']}, {'allele': '15928A', 'position': 15928, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-TT'], 'diseases': ['Multiple Sclerosis / idiopathic repeat miscarriage / AD protection']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '4216C', 'position': 4216, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND1'], 'diseases': ['LHON / Insulin Resistance /possible adaptive high altitude variant / miscarriage']}, {'allele': '4917G', 'position': 4917, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND2'], 'diseases': ['LHON / Insulin Resistance / AMD / NRTI-PN']}]
|