ATP16
FASTA
Metadata
Reference
Data
| identifier | ATP16 |
|---|---|
| alternative_identifiers | ['ATP16.SG'] |
| country | Spain |
| continent | Europe |
| region | Iberia |
| culture | C_Iberia_CA |
| epoch | Copper Age |
| group | CAIB |
| comment | - |
| latitude | 42.352500915527344 |
| longitude | -3.5183334350585938 |
| sex | F |
| site | El Portalon Cave, Sierra de Atapuerca |
| site_detail | - |
| mt_hg | X2c |
| ychr_hg | - |
| year_from | -3261 |
| year_to | -2916 |
| date_detail | 3261-2916 calBCE (4400±30 BP, Beta-368289) |
| bp | 4400±30 |
| c14_lab_code | Beta-368289 |
| c14_sample_tag | True |
| c14_layer_tag | - |
| avg_coverage | - |
| sequence_source | bam |
| reference | Günther et al. 2015. Ancient genomes link early farmers from Atapuerca in Spain to modern-day Basques. Proceedings of the National Academy of Sciences, 112(38), 11917-11922. (link) |
| data_link | https://www.ebi.ac.uk/ena/data/view/PRJEB9783 |
| ychr_snps | - |
| mitopathos | [{'allele': '12705T', 'position': 12705, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CO1'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '16189C', 'position': 16189, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Diabetes / Cardiomyopathy /cancer risk / mtDNA copy nbr / Metabolic Syndrome / Melanoma patients']}, {'allele': '195C', 'position': 195, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['BD-associated / melanoma pts']}] |