Ardu2
FASTA
Metadata
Reference
Data
| identifier | Ardu2 |
|---|---|
| alternative_identifiers | ['MA969'] |
| country | Estonia |
| continent | Europe |
| region | Baltic |
| culture | Corded Ware |
| epoch | Neolithic |
| group | CWC |
| comment | - |
| latitude | 59.099998474121094 |
| longitude | 25.366666793823242 |
| sex | M |
| site | Ardu, Harju county |
| site_detail | - |
| mt_hg | U5b2c |
| ychr_hg | R1a-Z645 |
| year_from | -2921 |
| year_to | -2555 |
| date_detail | 4871–4505 calBP |
| bp | 4110±40 |
| c14_lab_code | - |
| c14_sample_tag | True |
| c14_layer_tag | - |
| avg_coverage | 70.30999755859375 |
| sequence_source | bam |
| reference | Saag et al. 2017. Extensive Farming in Estonia Started through a Sex-Biased Migration from the Steppe. Current Biology, 27(14), 2185-2193.e6. (link) |
| data_link | https://www.ebi.ac.uk/ena/data/view/PRJEB21037 |
| ychr_snps | - |
| mitopathos | [{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '13637G', 'position': 13637, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Possible LHON factor']}, {'allele': '150T', 'position': 150, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Longevity / Cervical Carcinoma / HPV infection risk']}, {'allele': '16192T', 'position': 16192, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '16270T', 'position': 16270, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}] |
Ardu2
