Bar8

FASTA

Metadata

Reference

Data

identifier	Bar8
alternative_identifiers	['M10-106', 'Bar8.SG']
country	Turkey
continent	Asia
region	Near East
culture	Anatolia_Neolithic
epoch	Neolithic
group	NENE
comment	-
latitude	40.29999923706055
longitude	29.566667556762695
sex	F
site	Barcın, Marmara Region, Northwest Anatolia
site_detail	-
mt_hg	K1a2
ychr_hg	-
year_from	-6212
year_to	-6030
date_detail	6212-6030 calBCE (7238±38 BP, UBA-29837)
bp	7238±38
c14_lab_code	UBA-29837
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Hofmanova et al. 2016. Early farmers from across Europe directly descended from Neolithic Aegeans. Proceedings of the National Academy of Sciences, 113(25), 6886-6891. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB11848
ychr_snps	-
mitopathos	[{'allele': '10398G', 'position': 10398, 'status': 'Reported / lineage L & M marker / also hg IJK', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND3'], 'diseases': ['PD protective factor / longevity / altered cell pH / metabolic syndrome / breast cancer risk / Leigh Syndrome risk / ADHD / cognitive decline / SCA2 age of onset / Fuchs endothelial corneal dystrophy']}, {'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '16093C', 'position': 16093, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Cyclic Vomiting Syndrome']}, {'allele': '4437T', 'position': 4437, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-TM'], 'diseases': ['Hypotonia / seizure / muscle weakness / lactic acidosis / hearing loss']}, {'allele': '9055A', 'position': 9055, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ATP6'], 'diseases': ['PD protective factor']}]