BerryAuBac1
FASTA
Metadata
Reference
Data
| identifier | BerryAuBac1 |
|---|---|
| alternative_identifiers | ['BerryAuBac'] |
| country | France |
| continent | Europe |
| region | western Europe |
| culture | Hunter-Gatherer |
| epoch | Mesolithic |
| group | HGW |
| comment | - |
| latitude | 49.2400016784668 |
| longitude | 3.5399999618530273 |
| sex | M |
| site | Berry au bac |
| site_detail | - |
| mt_hg | U5b1a |
| ychr_hg | I |
| year_from | -5370 |
| year_to | -5220 |
| date_detail | 5370-5220 calBCE (6325±35 BP, SacA-5455) |
| bp | 6325±35 |
| c14_lab_code | SacA-5455 |
| c14_sample_tag | True |
| c14_layer_tag | - |
| avg_coverage | - |
| sequence_source | bam |
| reference | Fu et al. 2016. The genetic history of Ice Age Europe. Nature, 534(7606), 200-205. (link) |
| data_link | https://www.ebi.ac.uk/ena/data/view/PRJEB13123 |
| ychr_snps | ['I:CTS2514:14337364T->C', 'I:PF3836:22525421T->G'] |
| mitopathos | [{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '150T', 'position': 150, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Longevity / Cervical Carcinoma / HPV infection risk']}, {'allele': '16270T', 'position': 16270, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}] |
BerryAuBac1
