BerryAuBac1

FASTA

Metadata

Reference

Data

identifier	BerryAuBac1
alternative_identifiers	['BerryAuBac']
country	France
continent	Europe
region	western Europe
culture	Hunter-Gatherer
epoch	Mesolithic
group	HGW
comment	-
latitude	49.2400016784668
longitude	3.5399999618530273
sex	M
site	Berry au bac
site_detail	-
mt_hg	U5b1a
ychr_hg	I
year_from	-5370
year_to	-5220
date_detail	5370-5220 calBCE (6325±35 BP, SacA-5455)
bp	6325±35
c14_lab_code	SacA-5455
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Fu et al. 2016. The genetic history of Ice Age Europe. Nature, 534(7606), 200-205. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB13123
ychr_snps	['I:CTS2514:14337364T->C', 'I:PF3836:22525421T->G']
mitopathos	[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '150T', 'position': 150, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Longevity / Cervical Carcinoma / HPV infection risk']}, {'allele': '16270T', 'position': 16270, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}]