Bichon

Metadata

Reference

Data

identifier Bichon
alternative_identifiers ['Bichon.SG']
country Switzerland
continent Europe
region western Europe
culture Hunter-Gatherer
epoch Mesolithic
group HGW
comment -
latitude 47.099998474121094
longitude 6.869999885559082
sex M
site Grotte du Bichon
site_detail -
mt_hg U5b1h
ychr_hg I2a1a2a
year_from -11820
year_to -11610
date_detail 11820-11610 calBCE (11855±50 BP, OxA-27763)
bp 11855±50
c14_lab_code OxA-27763
c14_sample_tag True
c14_layer_tag -
avg_coverage -
sequence_source <NA>
reference Jones et al. 2015. Upper Palaeolithic genomes reveal deep roots of modern Eurasians. Nature Communications, 6(1), ?. (link)
data_link https://www.ebi.ac.uk/ena/data/view/PRJEB11364
ychr_snps ['I2:M438:16638804A->G', 'I:CTS48:2688442T->A', 'I:CTS674:6943522C->T', 'I:CTS1800:14073053G->A', 'I:CTS2193:14214481G->T', 'I:CTS2387:14286853T->C', 'I:CTS2514:14337364T->C', 'I:CTS2536:14352669G->A', 'I:CTS3384:14884659A->C', 'I:CTS4088:15389836T->C', 'I:CTS4209:15479899T->A', 'I:CTS4273:15536870C->T', 'I:CTS5764:16471254A->G', 'I:CTS6265:16780748C->G', 'I:CTS6751:17090238C->G', 'I:CTS7469:17497181C->A', 'I:CTS7831:17692855T->A', 'I:CTS8420:18018313C->A', 'I:CTS8963:18582617C->T', 'I:CTS10058:19233673A->G', 'I:CTS10941:22845794A->G', 'I:CTS11540:23156725C->T', 'I:FGC2412:21689728A->G', 'I:FGC2413:8262092C->T', 'I:FGC2415:13835003T->C', 'I:FI2:8382265C->G', 'I:L503:21359407C->G', 'I:L578:8267857G->A', 'I:L758:8536868C->G', 'I:L846:7856500C->T', 'I:L1197:14974451C->T', 'I:PF3627.2:6662712C->T', 'I:PF3640:7681156T->A', 'I:PF3641:7688470T->C', 'I:PF3660:8466652G->A', 'I:PF3661:8484606C->A', 'I:PF3665:8643763A->G', 'I:PF3677:9891668G->A', 'I:PF3794:21067903C->T', 'I:PF3796:21119888G->T', 'I:YSC0000272:22115103G->A', 'I:Z16987:22243817A->Ghet', 'I:CTS6231:16751000C->T', 'I:FI4:8873160G->T', 'I:M258:15023364T->C', 'I2:PF3664:8567995G->A', 'I:CTS88:2723755G->A', 'I:CTS3076:14646409C->T', 'I:CTS3517:14986989T->G', 'I:CTS4340:15595624G->A', 'I:CTS5946:16567253A->G', 'I:CTS6497:16939794A->T', 'I:CTS8742:18172947A->G', 'I:CTS8876:18257568G->A', 'I:CTS9860:19104986G->A', 'I:CTS11441:23113271C->G', 'I:CTS11979:23401471C->T', 'I:FGC2414:21155653C->T', 'I:FGC2416:7642823G->T', 'I:FGC7049:22459264G->A', 'I:L41:19048602G->A', 'I:L772:15615533C->A', 'I:L847:23154034C->T', 'I:M1460:21862684A->C', 'I:P38:14484379A->C', 'I:P212:3545070T->A', 'I:PF3797:21130059A->G', 'I:PF3800:21402723A->G', 'I:PF3806:21525069G->A', 'I:PF3814:21839183A->G', 'I:PF3815:21841289G->T', 'I:PF3817:21939618G->A', 'I:PF3836:22525421T->G', 'I:Z16985:13804066G->C', 'I2a:L460:7879415A->C', 'I2:L68:18700150C->T', 'I:CTS646:6926038T->A', 'I:CTS4848:15862842C->T', 'I:CTS4982:15937959C->T', 'I:CTS7540:17525137A->G', 'I:CTS7593:17548890G->A', 'I:CTS8333:17940414G->A', 'I:CTS9838:19097563T->C', 'I:FI3:8485677C->A', 'I:L844.1:2884029T->C', 'I:PF3742:16354708G->A', 'I:CTS1301:7321418C->T', 'I:CTS5650:16415916A->G', 'I:CTS8345:17949402C->G', 'I:CTS11779:23267211G->A', 'I:FGC7050:22479907A->T', 'I:PF3687:13610767C->T', 'I:PF3828:22458430C->T', 'I:PF3837:22573702G->A', 'I:CTS3383:14884646C->T', 'I:CTS5263:16171560G->A', 'I:CTS7329:17424807C->T', 'I:CTS8545:18078759T->A', 'I:L755:8465165C->T', 'I:M11064:7244075A->G', 'I:PF3611:5586317G->C', 'I:CTS1006:7137088C->T', 'I:CTS4077:15377802G->A', 'I:CTS4745:15793946G->A', 'I:CTS5622:16397716C->A', 'I:CTS6343:16836079C->A', 'I:CTS6344:16836548G->A', 'I:CTS9269:18789763C->T', 'I:FGC2411:9900057A->G', 'I:FGC2418:4974832A->G', 'I:PF3574:2974782A->C', 'I:PF3596:4403308T->G', 'I:PF3601:5129448G->A', 'I:PF3649:8046731A->C', 'I:PF3654:8278628T->C', 'I:PF3666:8728974T->G', 'I:PF3670:8984184A->G', 'I:PF3695:13914715A->T', 'I:PF3759:17467526G->A', 'I:PF3809:21556106G->A', 'I:PF3847:23479970A->C', 'I:PF3864:7898045A->G', 'I:Y1847:5129449G->A', 'I:L751:18394743A->G', 'I:PF3803:21452125A->G', 'I:CTS4664:15759200T->C', 'I:CTS4752:15799074C->T', 'I:CTS6334:16826642G->A', 'I:CTS8064:17818847G->A', 'I:PF3604:5206105C->T', 'I:PF3642:7712917A->T', 'I:PF3645:7853028C->A', 'I:PF3675:9516653T->G', 'I:PF3804:21465033C->A', 'I:CTS9618:18992894T->C', 'I:FGC2417:10051801G->A', 'I:CTS4272:15536759T->C', 'I:CTS4637:15742130C->A', 'I:CTS5150:16039881C->T', 'I:CTS5908:16548548G->A', 'I:CTS7502:17511797A->Ghet', 'I:PF3807:21535086G->A', 'I:PF3819:22100087T->C', 'I:PF3780:18404486C->T', 'I:CTS9264:18786174G->A', 'I:CTS70:2707072C->T', 'I:CTS8300:17924382T->A', 'I:PF3829:22458740A->Ghet', 'I:PF3594:4245332T->C', 'I:YSC0000256.1:9827411G->A', 'I:PF3639:7570370A->G', 'I:PF3685:13544835A->T', 'I:M170:14847792A->C', 'I:PF3795:21077471C->T', 'I:PF3672:9376351T->C', 'I:PF3694:13900590T->C', 'I2a1a2a:L1286:21778662G->A', 'I2a1a2:S21825:19126655G->A', 'I2a1a:CTS595:6874115C->T', 'I:CTS1555:13961890G->A', 'I:CTS4239:15506055T->C', 'I:CTS7026:17245841T->Chet', 'I:CTS9484:18927031T->C', 'I:CTS11369:23084562G->T', 'I:FGC2443:3315632T->C', 'I:PF3603:5197625G->C', 'I:PF3605:5217196A->G', 'I:PF3689:13642029A->C', 'I:PF3822:22200336G->Ahet', 'I:Z16984:13442439C->Thet']
mitopathos -