CL145
FASTA
Metadata
Reference
Data
| identifier | CL145 |
|---|---|
| alternative_identifiers | - |
| country | Italy |
| continent | Europe |
| region | southern Europe |
| culture | Longobards |
| epoch | Middle Ages |
| group | LONG |
| comment | - |
| latitude | 45.08333206176758 |
| longitude | 7.5833330154418945 |
| sex | M |
| site | Collegno |
| site_detail | - |
| mt_hg | T2b |
| ychr_hg | R1b1a2a1a |
| year_from | 570 |
| year_to | 880 |
| date_detail | 570-880 CE (Phase 1: 570/590–630/640, Phase 2: 640–700, Phase 3: 8th century) |
| bp | - |
| c14_lab_code | - |
| c14_sample_tag | - |
| c14_layer_tag | True |
| avg_coverage | 6.550000190734863 |
| sequence_source | reconstructed |
| reference | Amorim et al. 2018. Understanding 6th-century barbarian social organization and migration through paleogenomics. Nature Communications, 9(1), ?. (link) |
| data_link | https://www.ncbi.nlm.nih.gov/biosample/8513186 |
| ychr_snps | ['L151'] |
| mitopathos | [{'allele': '11251G', 'position': 11251, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-ND4'], 'diseases': ['Reduced risk of PD']}, {'allele': '4216C', 'position': 4216, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND1'], 'diseases': ['LHON / Insulin Resistance /possible adaptive high altitude variant / miscarriage']}, {'allele': '4917G', 'position': 4917, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND2'], 'diseases': ['LHON / Insulin Resistance / AMD / NRTI-PN']}] |