CL146

FASTA

Metadata

Reference

Data

identifier	CL146
alternative_identifiers	-
country	Italy
continent	Europe
region	southern Europe
culture	Longobards
epoch	Middle Ages
group	LONG
comment	-
latitude	45.08333206176758
longitude	7.5833330154418945
sex	M
site	Collegno
site_detail	-
mt_hg	T2b3
ychr_hg	R1b1a2a1a
year_from	570
year_to	880
date_detail	570-880 CE (Phase 1: 570/590–630/640, Phase 2: 640–700, Phase 3: 8th century)
bp	-
c14_lab_code	-
c14_sample_tag	-
c14_layer_tag	True
avg_coverage	12.5600004196167
sequence_source	reconstructed
reference	Amorim et al. 2018. Understanding 6th-century barbarian social organization and migration through paleogenomics. Nature Communications, 9(1), ?. (link)
data_link	https://www.ncbi.nlm.nih.gov/biosample/8513187
ychr_snps	['L151']
mitopathos	[{'allele': '11251G', 'position': 11251, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-ND4'], 'diseases': ['Reduced risk of PD']}, {'allele': '15928A', 'position': 15928, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-TT'], 'diseases': ['Multiple Sclerosis / idiopathic repeat miscarriage / AD protection']}, {'allele': '195C', 'position': 195, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['BD-associated / melanoma pts']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '4216C', 'position': 4216, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND1'], 'diseases': ['LHON / Insulin Resistance /possible adaptive high altitude variant / miscarriage']}, {'allele': '4917G', 'position': 4917, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND2'], 'diseases': ['LHON / Insulin Resistance / AMD / NRTI-PN']}]