CL30

FASTA

Metadata

Reference

Data

identifier	CL30
alternative_identifiers	-
country	Italy
continent	Europe
region	southern Europe
culture	Longobards
epoch	Middle Ages
group	LONG
comment	-
latitude	45.08333206176758
longitude	7.5833330154418945
sex	M
site	Collegno
site_detail	-
mt_hg	I1b
ychr_hg	R1b1a1a2a1a2
year_from	570
year_to	880
date_detail	570-880 CE (Phase 1: 570/590–630/640, Phase 2: 640–700, Phase 3: 8th century)
bp	-
c14_lab_code	-
c14_sample_tag	-
c14_layer_tag	True
avg_coverage	17.06999969482422
sequence_source	reconstructed
reference	Amorim et al. 2018. Understanding 6th-century barbarian social organization and migration through paleogenomics. Nature Communications, 9(1), ?. (link)
data_link	https://www.ncbi.nlm.nih.gov/biosample/8513170
ychr_snps	['S116']
mitopathos	[{'allele': '10398G', 'position': 10398, 'status': 'Reported / lineage L & M marker / also hg IJK', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND3'], 'diseases': ['PD protective factor / longevity / altered cell pH / metabolic syndrome / breast cancer risk / Leigh Syndrome risk / ADHD / cognitive decline / SCA2 age of onset / Fuchs endothelial corneal dystrophy']}, {'allele': '12705T', 'position': 12705, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CO1'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '15043A', 'position': 15043, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CYB'], 'diseases': ['MDD-associated']}, {'allele': '15924G', 'position': 15924, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-TT'], 'diseases': ['LIMM']}, {'allele': '16129A', 'position': 16129, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Cyclic Vomiting Syndrome with Migraine']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '9966A', 'position': 9966, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CO3'], 'diseases': ['LHON possible helper variant']}]