CL38
FASTA
Metadata
Reference
Data
| identifier | CL38 |
|---|---|
| alternative_identifiers | - |
| country | Italy |
| continent | Europe |
| region | southern Europe |
| culture | Longobards |
| epoch | Middle Ages |
| group | LONG |
| comment | - |
| latitude | 45.08333206176758 |
| longitude | 7.5833330154418945 |
| sex | M |
| site | Collegno |
| site_detail | - |
| mt_hg | X2 |
| ychr_hg | E1b1b1a1b1a3 |
| year_from | 570 |
| year_to | 880 |
| date_detail | 570-880 CE (Phase 1: 570/590–630/640, Phase 2: 640–700, Phase 3: 8th century) |
| bp | - |
| c14_lab_code | - |
| c14_sample_tag | - |
| c14_layer_tag | True |
| avg_coverage | 9.40999984741211 |
| sequence_source | reconstructed |
| reference | Amorim et al. 2018. Understanding 6th-century barbarian social organization and migration through paleogenomics. Nature Communications, 9(1), ?. (link) |
| data_link | https://www.ncbi.nlm.nih.gov/biosample/8513173 |
| ychr_snps | ['PF2211'] |
| mitopathos | [{'allele': '12705T', 'position': 12705, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CO1'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '16189C', 'position': 16189, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Diabetes / Cardiomyopathy /cancer risk / mtDNA copy nbr / Metabolic Syndrome / Melanoma patients']}, {'allele': '195C', 'position': 195, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['BD-associated / melanoma pts']}] |