DA104

FASTA

Metadata

Reference

Data

identifier DA104
alternative_identifiers ['Kyr 62']
country Kyrgyzstan
continent Asia
region Tian Shan
culture Hun
epoch Iron Age
group IAKy
comment -
latitude 42.156944274902344
longitude 77.40555572509766
sex F
site Kurgan nr. 1 / 2 (grav 2), Uch-Kurbu
site_detail -
mt_hg F1b1+@152
ychr_hg -
year_from 100
year_to 500
date_detail 100-500 CE
bp -
c14_lab_code -
c14_sample_tag -
c14_layer_tag True
avg_coverage 224.0330047607422
sequence_source bam
reference de Barros Damgaard et al. 2018. 137 ancient human genomes from across the Eurasian steppes. Nature, 557(7705), 369-374. (link)
data_link https://www.ebi.ac.uk/ena/data/view/PRJEB20658
ychr_snps -
mitopathos [{'allele': '16183C', 'position': 16183, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '16189C', 'position': 16189, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Diabetes / Cardiomyopathy /cancer risk / mtDNA copy nbr / Metabolic Syndrome / Melanoma patients']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '6962A', 'position': 6962, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CO1'], 'diseases': ['Possible helper variant for 15927A']}]