DA126

FASTA

Metadata

Reference

Data

identifier	DA126
alternative_identifiers	['IS7']
country	Kazakhstan
continent	Asia
region	Tian Shan
culture	Nomad_MA
epoch	Middle Ages
group	MAKa
comment	-
latitude	43.3849983215332
longitude	77.5411148071289
sex	M
site	Almaly, Kurgan 1, Object 1, Issyk, Tian Shan
site_detail	-
mt_hg	F2c1
ychr_hg	-
year_from	901
year_to	920
date_detail	-
bp	1078±37
c14_lab_code	UBA-31228
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	216.4759979248047
sequence_source	bam
reference	de Barros Damgaard et al. 2018. 137 ancient human genomes from across the Eurasian steppes. Nature, 557(7705), 369-374. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB20658
ychr_snps	-
mitopathos	[{'allele': '1005C', 'position': 1005, 'status': 'Unclear', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-RNR1'], 'diseases': ['DEAF']}, {'allele': '11150A', 'position': 11150, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Found in a Multiple Sclerosis patient']}, {'allele': '12338C', 'position': 12338, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['DEAF1555 increased penetrance / LHON']}, {'allele': '13708A', 'position': 13708, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-ND5'], 'diseases': ['LHON / Increased MS risk / higher freq in PD-ADS']}, {'allele': '16183C', 'position': 16183, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '16189C', 'position': 16189, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Diabetes / Cardiomyopathy /cancer risk / mtDNA copy nbr / Metabolic Syndrome / Melanoma patients']}, {'allele': '4440A', 'position': 4440, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-TM'], 'diseases': ['Mitochondrial myopathy']}]