DA13
FASTA
Metadata
Reference
Data
| identifier | DA13 |
|---|---|
| alternative_identifiers | ['KG38'] |
| country | Kazakhstan |
| continent | Asia |
| region | Central steppe |
| culture | Saka |
| epoch | Iron Age |
| group | IAST |
| comment | CentralSaka |
| latitude | 49.060646057128906 |
| longitude | 75.5031967163086 |
| sex | M |
| site | Taldy 2, Kurgan 5, Karkarali |
| site_detail | - |
| mt_hg | A+152+16362+16189 |
| ychr_hg | R1 |
| year_from | -752 |
| year_to | -682 |
| date_detail | - |
| bp | 2471±31 |
| c14_lab_code | UBA-31138 |
| c14_sample_tag | True |
| c14_layer_tag | - |
| avg_coverage | 525.802001953125 |
| sequence_source | bam |
| reference | de Barros Damgaard et al. 2018. 137 ancient human genomes from across the Eurasian steppes. Nature, 557(7705), 369-374. (link) |
| data_link | https://www.ebi.ac.uk/ena/data/view/PRJEB20658 |
| ychr_snps | - |
| mitopathos | [{'allele': '12705T', 'position': 12705, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CO1'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '150T', 'position': 150, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Longevity / Cervical Carcinoma / HPV infection risk']}, {'allele': '16093C', 'position': 16093, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Cyclic Vomiting Syndrome']}, {'allele': '16189C', 'position': 16189, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Diabetes / Cardiomyopathy /cancer risk / mtDNA copy nbr / Metabolic Syndrome / Melanoma patients']}, {'allele': '4440A', 'position': 4440, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-TM'], 'diseases': ['Mitochondrial myopathy']}, {'allele': '663G', 'position': 663, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-RNR1'], 'diseases': ['Coronary atherosclerosis risk']}, {'allele': '7462T', 'position': 7462, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-TS1'], 'diseases': ['DEAF']}] |
DA13
