DA13

FASTA

Metadata

Reference

Data

identifier	DA13
alternative_identifiers	['KG38']
country	Kazakhstan
continent	Asia
region	Central steppe
culture	Saka
epoch	Iron Age
group	IAST
comment	CentralSaka
latitude	49.060646057128906
longitude	75.5031967163086
sex	M
site	Taldy 2, Kurgan 5, Karkarali
site_detail	-
mt_hg	A+152+16362+16189
ychr_hg	R1
year_from	-752
year_to	-682
date_detail	-
bp	2471±31
c14_lab_code	UBA-31138
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	525.802001953125
sequence_source	bam
reference	de Barros Damgaard et al. 2018. 137 ancient human genomes from across the Eurasian steppes. Nature, 557(7705), 369-374. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB20658
ychr_snps	-
mitopathos	[{'allele': '12705T', 'position': 12705, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CO1'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '150T', 'position': 150, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Longevity / Cervical Carcinoma / HPV infection risk']}, {'allele': '16093C', 'position': 16093, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Cyclic Vomiting Syndrome']}, {'allele': '16189C', 'position': 16189, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Diabetes / Cardiomyopathy /cancer risk / mtDNA copy nbr / Metabolic Syndrome / Melanoma patients']}, {'allele': '4440A', 'position': 4440, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-TM'], 'diseases': ['Mitochondrial myopathy']}, {'allele': '663G', 'position': 663, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-RNR1'], 'diseases': ['Coronary atherosclerosis risk']}, {'allele': '7462T', 'position': 7462, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-TS1'], 'diseases': ['DEAF']}]