DA130

FASTA

Metadata

Reference

Data

identifier	DA130
alternative_identifiers	['IS11']
country	Kazakhstan
continent	Asia
region	Tian Shan
culture	Saka
epoch	Iron Age
group	IAKa
comment	TianShanSaka
latitude	43.36861038208008
longitude	77.42666625976562
sex	M
site	Ornek, Object 1, Kurgan 2, Issyk Tian Shan
site_detail	-
mt_hg	G2a1
ychr_hg	R
year_from	-357
year_to	-284
date_detail	-
bp	2199±32
c14_lab_code	UBA-31232
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	57.702999114990234
sequence_source	bam
reference	de Barros Damgaard et al. 2018. 137 ancient human genomes from across the Eurasian steppes. Nature, 557(7705), 369-374. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB20658
ychr_snps	-
mitopathos	[{'allele': '10398G', 'position': 10398, 'status': 'Reported / lineage L & M marker / also hg IJK', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND3'], 'diseases': ['PD protective factor / longevity / altered cell pH / metabolic syndrome / breast cancer risk / Leigh Syndrome risk / ADHD / cognitive decline / SCA2 age of onset / Fuchs endothelial corneal dystrophy']}, {'allele': '12705T', 'position': 12705, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CO1'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '15043A', 'position': 15043, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CYB'], 'diseases': ['MDD-associated']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '489C', 'position': 489, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Low VO2max response']}]