DA15

FASTA

Metadata

Reference

Data

identifier DA15
alternative_identifiers ['KG40']
country Kazakhstan
continent Asia
region Central steppe
culture Saka
epoch Iron Age
group IAST
comment CentralSaka
latitude 48.482208251953125
longitude 74.4236831665039
sex M
site Karasjoky 6, Kurgan 1, Karkarali
site_detail -
mt_hg C4d
ychr_hg -
year_from -755
year_to -680
date_detail -
bp 2470±43
c14_lab_code UBA-31140
c14_sample_tag True
c14_layer_tag -
avg_coverage 215.25
sequence_source bam
reference de Barros Damgaard et al. 2018. 137 ancient human genomes from across the Eurasian steppes. Nature, 557(7705), 369-374. (link)
data_link https://www.ebi.ac.uk/ena/data/view/PRJEB20658
ychr_snps -
mitopathos [{'allele': '10398G', 'position': 10398, 'status': 'Reported / lineage L & M marker / also hg IJK', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND3'], 'diseases': ['PD protective factor / longevity / altered cell pH / metabolic syndrome / breast cancer risk / Leigh Syndrome risk / ADHD / cognitive decline / SCA2 age of onset / Fuchs endothelial corneal dystrophy']}, {'allele': '12705T', 'position': 12705, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CO1'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '15043A', 'position': 15043, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CYB'], 'diseases': ['MDD-associated']}, {'allele': '3552A', 'position': 3552, 'status': 'Reported /hg C marker', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND1'], 'diseases': ['Resistance to high altitude pulmonary edema (HAPE)']}, {'allele': '489C', 'position': 489, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Low VO2max response']}]