DA18

FASTA

Metadata

Reference

Data

identifier	DA18
alternative_identifiers	['PD28']
country	Kazakhstan
continent	Asia
region	Central steppe
culture	Nomad_IA
epoch	Iron Age
group	IAST
comment	-
latitude	51.71055603027344
longitude	74.88416290283203
sex	F
site	Sjigerkinskoje 2, Burial 1, Sjiderte, Pavlodar
site_detail	-
mt_hg	U5b1c2
ychr_hg	-
year_from	-753
year_to	-681
date_detail	-
bp	2463±45
c14_lab_code	UBA-31143
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	329.3380126953125
sequence_source	bam
reference	de Barros Damgaard et al. 2018. 137 ancient human genomes from across the Eurasian steppes. Nature, 557(7705), 369-374. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB20658
ychr_snps	-
mitopathos	[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '150T', 'position': 150, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Longevity / Cervical Carcinoma / HPV infection risk']}, {'allele': '15894A', 'position': 15894, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-TT'], 'diseases': ['Gout']}, {'allele': '16270T', 'position': 16270, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}]