DA190

FASTA

Metadata

Reference

Data

identifier DA190
alternative_identifiers ['OS9']
country Russia
continent Europe
region Pontic steppe
culture SaltovoMayaki
epoch Middle Ages
group MAST
comment -
latitude 50.476192474365234
longitude 36.98280334472656
sex M
site Belgorod region
site_detail -
mt_hg U1a1c1
ychr_hg -
year_from 649
year_to 680
date_detail -
bp 1351±32
c14_lab_code UBA-31237
c14_sample_tag True
c14_layer_tag -
avg_coverage 88.4219970703125
sequence_source bam
reference de Barros Damgaard et al. 2018. 137 ancient human genomes from across the Eurasian steppes. Nature, 557(7705), 369-374. (link)
data_link https://www.ebi.ac.uk/ena/data/view/PRJEB20658
ychr_snps -
mitopathos [{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12397G', 'position': 12397, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['PD / early onset']}]