DA2

FASTA

Metadata

Reference

Data

identifier	DA2
alternative_identifiers	['St.Pet. 63']
country	Russia
continent	Asia
region	Siberia
culture	Tagar
epoch	Iron Age
group	IASI
comment	-
latitude	54.67583465576172
longitude	90.8536148071289
sex	M
site	Grishkin Log 1
site_detail	-
mt_hg	N1a1a1a1
ychr_hg	R1
year_from	-898
year_to	-835
date_detail	-
bp	2725±31
c14_lab_code	UBA-31135
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	224.2740020751953
sequence_source	bam
reference	de Barros Damgaard et al. 2018. 137 ancient human genomes from across the Eurasian steppes. Nature, 557(7705), 369-374. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB20658
ychr_snps	-
mitopathos	[{'allele': '10398G', 'position': 10398, 'status': 'Reported / lineage L & M marker / also hg IJK', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND3'], 'diseases': ['PD protective factor / longevity / altered cell pH / metabolic syndrome / breast cancer risk / Leigh Syndrome risk / ADHD / cognitive decline / SCA2 age of onset / Fuchs endothelial corneal dystrophy']}, {'allele': '12280G', 'position': 12280, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-TL2'], 'diseases': ['Hypertension']}, {'allele': '12705T', 'position': 12705, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CO1'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '15043A', 'position': 15043, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CYB'], 'diseases': ['MDD-associated']}, {'allele': '3336C', 'position': 3336, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-ND1'], 'diseases': ['Carotid atherosclerosis risk']}, {'allele': '669C', 'position': 669, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-RNR1'], 'diseases': ['DEAF']}]