DA203
FASTA
Metadata
Reference
Data
| identifier | DA203 |
|---|---|
| alternative_identifiers | ['Cemetery Butakty 1', 'grave 25'] |
| country | Kazakhstan |
| continent | Asia |
| region | Central steppe |
| culture | Karakhanid |
| epoch | Middle Ages |
| group | MAST |
| comment | - |
| latitude | 43.20249938964844 |
| longitude | 76.9816665649414 |
| sex | M |
| site | Cemetery Butakty 1, grave 25 |
| site_detail | - |
| mt_hg | G2a2 |
| ychr_hg | - |
| year_from | 950 |
| year_to | 1250 |
| date_detail | 700-1000 BP |
| bp | - |
| c14_lab_code | - |
| c14_sample_tag | - |
| c14_layer_tag | True |
| avg_coverage | 139.29600524902344 |
| sequence_source | bam |
| reference | de Barros Damgaard et al. 2018. 137 ancient human genomes from across the Eurasian steppes. Nature, 557(7705), 369-374. (link) |
| data_link | https://www.ebi.ac.uk/ena/data/view/PRJEB20658 |
| ychr_snps | - |
| mitopathos | [{'allele': '10398G', 'position': 10398, 'status': 'Reported / lineage L & M marker / also hg IJK', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND3'], 'diseases': ['PD protective factor / longevity / altered cell pH / metabolic syndrome / breast cancer risk / Leigh Syndrome risk / ADHD / cognitive decline / SCA2 age of onset / Fuchs endothelial corneal dystrophy']}, {'allele': '12705T', 'position': 12705, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CO1'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '15043A', 'position': 15043, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CYB'], 'diseases': ['MDD-associated']}, {'allele': '16189C', 'position': 16189, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Diabetes / Cardiomyopathy /cancer risk / mtDNA copy nbr / Metabolic Syndrome / Melanoma patients']}, {'allele': '4833G', 'position': 4833, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND2'], 'diseases': ['Diabetes helper mutation AD / PD']}, {'allele': '489C', 'position': 489, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Low VO2max response']}] |
DA203
