DA230

FASTA

Metadata

Reference

Data

identifier DA230
alternative_identifiers ['Butakty 1 settlement']
country Kazakhstan
continent Asia
region Tian Shan
culture Karluk
epoch Middle Ages
group MAKa
comment -
latitude 43.20249938964844
longitude 76.9816665649414
sex M
site Butakty 1 settlement
site_detail -
mt_hg F1b1e
ychr_hg -
year_from 750
year_to 950
date_detail 1200-1000 BP
bp -
c14_lab_code -
c14_sample_tag -
c14_layer_tag True
avg_coverage 837.1110229492188
sequence_source bam
reference de Barros Damgaard et al. 2018. 137 ancient human genomes from across the Eurasian steppes. Nature, 557(7705), 369-374. (link)
data_link https://www.ebi.ac.uk/ena/data/view/PRJEB20658
ychr_snps -
mitopathos [{'allele': '16183C', 'position': 16183, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '16189C', 'position': 16189, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Diabetes / Cardiomyopathy /cancer risk / mtDNA copy nbr / Metabolic Syndrome / Melanoma patients']}, {'allele': '6962A', 'position': 6962, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CO1'], 'diseases': ['Possible helper variant for 15927A']}]