DA3

FASTA

Metadata

Reference

Data

identifier DA3
alternative_identifiers ['St.Pet. 64']
country Russia
continent Asia
region Siberia
culture Tagar
epoch Iron Age
group IASI
comment -
latitude 54.67583465576172
longitude 90.8536148071289
sex F
site Grishkin Log 1
site_detail -
mt_hg N9a9
ychr_hg -
year_from -900
year_to -600
date_detail 900-600 BCE
bp -
c14_lab_code -
c14_sample_tag -
c14_layer_tag True
avg_coverage 368.2850036621094
sequence_source bam
reference de Barros Damgaard et al. 2018. 137 ancient human genomes from across the Eurasian steppes. Nature, 557(7705), 369-374. (link)
data_link https://www.ebi.ac.uk/ena/data/view/PRJEB20658
ychr_snps -
mitopathos [{'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12705T', 'position': 12705, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CO1'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '150T', 'position': 150, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Longevity / Cervical Carcinoma / HPV infection risk']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}]