DA39
FASTA
Metadata
Reference
Data
| identifier | DA39 |
|---|---|
| alternative_identifiers | ['XiongNu 92'] |
| country | Mongolia |
| continent | Asia |
| region | Central Asian Plateau |
| culture | XiongNu |
| epoch | Iron Age |
| group | IAMo |
| comment | - |
| latitude | 48.01777648925781 |
| longitude | 101.35333251953125 |
| sex | M |
| site | Arkhangai, Grave #1 |
| site_detail | “aristocrat” |
| mt_hg | N9a2a |
| ychr_hg | R1 |
| year_from | -49 |
| year_to | 53 |
| date_detail | - |
| bp | 2007±46 |
| c14_lab_code | UBA-33599 |
| c14_sample_tag | True |
| c14_layer_tag | - |
| avg_coverage | 670.3200073242188 |
| sequence_source | bam |
| reference | de Barros Damgaard et al. 2018. 137 ancient human genomes from across the Eurasian steppes. Nature, 557(7705), 369-374. (link) |
| data_link | https://www.ebi.ac.uk/ena/data/view/PRJEB20658 |
| ychr_snps | - |
| mitopathos | [{'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12705T', 'position': 12705, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CO1'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '150T', 'position': 150, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Longevity / Cervical Carcinoma / HPV infection risk']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '4440A', 'position': 4440, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-TM'], 'diseases': ['Mitochondrial myopathy']}, {'allele': '5153G', 'position': 5153, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-ND2'], 'diseases': ['Recurrent pregnancy loss']}, {'allele': '9966A', 'position': 9966, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CO3'], 'diseases': ['LHON possible helper variant']}, {'allele': '961C', 'position': 961, 'status': 'Unclear', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-RNR1'], 'diseases': ['DEAF / possibly LVNC-associated']}] |
DA39
