DA39

FASTA

Metadata

Reference

Data

identifier	DA39
alternative_identifiers	['XiongNu 92']
country	Mongolia
continent	Asia
region	Central Asian Plateau
culture	XiongNu
epoch	Iron Age
group	IAMo
comment	-
latitude	48.01777648925781
longitude	101.35333251953125
sex	M
site	Arkhangai, Grave #1
site_detail	“aristocrat”
mt_hg	N9a2a
ychr_hg	R1
year_from	-49
year_to	53
date_detail	-
bp	2007±46
c14_lab_code	UBA-33599
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	670.3200073242188
sequence_source	bam
reference	de Barros Damgaard et al. 2018. 137 ancient human genomes from across the Eurasian steppes. Nature, 557(7705), 369-374. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB20658
ychr_snps	-
mitopathos	[{'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12705T', 'position': 12705, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CO1'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '150T', 'position': 150, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Longevity / Cervical Carcinoma / HPV infection risk']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '4440A', 'position': 4440, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-TM'], 'diseases': ['Mitochondrial myopathy']}, {'allele': '5153G', 'position': 5153, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-ND2'], 'diseases': ['Recurrent pregnancy loss']}, {'allele': '9966A', 'position': 9966, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CO3'], 'diseases': ['LHON possible helper variant']}, {'allele': '961C', 'position': 961, 'status': 'Unclear', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-RNR1'], 'diseases': ['DEAF / possibly LVNC-associated']}]