DV16

FASTA

Metadata

Reference

Data

identifier	DV16
alternative_identifiers	['Vestonice16', 'DolniVestonice16', 'DVes16']
country	Czech Republic
continent	Europe
region	central Europe
culture	Hunter-Gatherer
epoch	Gravettian
group	HGC
comment	-
latitude	48.529998779296875
longitude	16.389999389648438
sex	M
site	Dolní Věstonice
site_detail	-
mt_hg	U5
ychr_hg	C1a2
year_from	-28760
year_to	-27360
date_detail	28760-27360 BCE [28634-27458 calBCE (25740±210 BP, GrN-15277), 28586-27086 calBCE (25570±280 BP, GrN-15276), layer date]
bp	-
c14_lab_code	-
c14_sample_tag	-
c14_layer_tag	True
avg_coverage	-
sequence_source	bam
reference	Fu et al. 2016. The genetic history of Ice Age Europe. Nature, 534(7606), 200-205. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB13123
ychr_snps	['C1a2:V20:6845955G->A', 'C1:CTS6773:17100606C->T', 'C:CTS6266:16780809G->A', 'C:CTS7301:17412198T->C', 'C:F1029:7629098T->C', 'C:F1804:14603298C->T', 'C:F2678:18030738C->T', 'C:F3043:19411754G->A', 'C:F3395:23031841G->A', 'C:F3703:16409159C->A', 'C:Y1767:21186558A->G', 'C:Z3958:7869808C->T', 'C:Z3974:8585701A->G', 'C1a2:Y10458:14400573C->A', 'C1a2:Z28838:13670713A->T', 'C1a:CTS11043:22914979G->T', 'C:CTS4676:15762839A->G', 'C:CTS6492:16932181C->T', 'C:CTS10534:19525421C->T', 'C:CTS11820:23294948T->C', 'C:F1044:7671399A->G', 'C:F1288:8537273G->A', 'C:F1367:8640245C->G', 'C:F1727:14206892C->T', 'C:F2253:16757900C->T', 'C:F2449:17341195G->T', 'C:F2869:18843140C->T', 'C:F2888:18890063C->T', 'C:F3462:23553006C->T', 'C:F3537:23769373A->G', 'C:F3712:17957903T->C', 'C:Y2798:13865051G->T', 'C:Y6691:15896404A->G', 'C:Z3977:8673832C->T', 'C:Z3983:8856026G->A', 'C:Z4004:13228027G->T', 'C:Z4014:13656195T->A', 'C:Z4082:21797986T->A', 'C:Z4091:21974190T->C', 'C:Z7177:8668533C->T', 'C1a2:V2185:8531334T->A', 'C:CTS2377:14281450G->A', 'C:CTS5813:16490115G->A', 'C:CTS7930:17748163T->C', 'C:CTS10707:22714249G->A', 'C:CTS10782:22775162C->A', 'C:F1217:8454895T->C', 'C:IMS-JST029149:2803297C->T', 'C:Y4496:8127435A->G', 'C:CTS3221:14742373C->T', 'C:Z7144:7310355C->T', 'C:CTS10442:19457443A->G', 'C:F2774:18572332T->C', 'C:F3388:23020085A->T', 'C:P255:8685038G->A', 'C:CTS10271:19361507G->A', 'C:Z7785:13643760C->T', 'C1a2:V86:6909957G->A', 'C:F2485:17457010C->T', 'C:Z4059:21291275G->A', 'C:CTS4686:15769171C->T', 'C:CTS4934:15909160C->T', 'C:F2258:16768835C->T', 'C:F1307:8560645A->G', 'C1a2:Y11592:15553446A->G', 'C:Z4099:22168468A->Ghet']
mitopathos	[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '16192T', 'position': 16192, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '16270T', 'position': 16270, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}]