Falkenstein

FASTA

Metadata

Reference

Data

identifier	Falkenstein
alternative_identifiers	['Falkenstein']
country	Germany
continent	Europe
region	central Europe
culture	Hunter-Gatherer
epoch	Mesolithic
group	HGW
comment	-
latitude	48.060001373291016
longitude	9.039999961853027
sex	M
site	Falkenstein-Höhle, Swabian Jura, Baden-Württemberg,
site_detail	-
mt_hg	U5a2c
ychr_hg	I2a2a
year_from	-7460
year_to	-7040
date_detail	7460-7040 calBCE (8185±80 BP, ETH-7615)
bp	8185±80
c14_lab_code	ETH-7615
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Fu et al. 2016. The genetic history of Ice Age Europe. Nature, 534(7606), 200-205. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB13123
ychr_snps	['I:CTS8420:18018313C->A', 'I:PF3640:7681156T->A', 'I:CTS88:2723755G->A', 'I:PF3814:21839183A->G', 'I2a2a:P223:16699334C->G', 'I:L751:18394743A->G']
mitopathos	[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '13637G', 'position': 13637, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Possible LHON factor']}, {'allele': '150T', 'position': 150, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Longevity / Cervical Carcinoma / HPV infection risk']}, {'allele': '16192T', 'position': 16192, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '16270T', 'position': 16270, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}]