GOK5

FASTA

Metadata

Reference

Data

identifier	GOK5
alternative_identifiers	['Gokhem5']
country	Sweden
continent	Europe
region	Scandinavia
culture	Sweden_MN
epoch	Neolithic
group	FBC
comment	-
latitude	58.17361068725586
longitude	13.407500267028809
sex	F
site	Gökhem, Vastergotland
site_detail	-
mt_hg	-
ychr_hg	-
year_from	-3280
year_to	-2890
date_detail	3280-2890 calBCE (4440±30 BP, Beta-368294)
bp	4440±30
c14_lab_code	Beta-368294
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Skoglund et al. 2014. Genomic Diversity and Admixture Differs for Stone-Age Scandinavian Foragers and Farmers. Science, 344(6185), 747-750. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB6090
ychr_snps	-
mitopathos	[{'allele': '10398G', 'position': 10398, 'status': 'Reported / lineage L & M marker / also hg IJK', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND3'], 'diseases': ['PD protective factor / longevity / altered cell pH / metabolic syndrome / breast cancer risk / Leigh Syndrome risk / ADHD / cognitive decline / SCA2 age of onset / Fuchs endothelial corneal dystrophy']}, {'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '9055A', 'position': 9055, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ATP6'], 'diseases': ['PD protective factor']}]