GOK5
FASTA
Metadata
Reference
Data
| identifier | GOK5 |
|---|---|
| alternative_identifiers | ['Gokhem5'] |
| country | Sweden |
| continent | Europe |
| region | Scandinavia |
| culture | Sweden_MN |
| epoch | Neolithic |
| group | FBC |
| comment | - |
| latitude | 58.17361068725586 |
| longitude | 13.407500267028809 |
| sex | F |
| site | Gökhem, Vastergotland |
| site_detail | - |
| mt_hg | - |
| ychr_hg | - |
| year_from | -3280 |
| year_to | -2890 |
| date_detail | 3280-2890 calBCE (4440±30 BP, Beta-368294) |
| bp | 4440±30 |
| c14_lab_code | Beta-368294 |
| c14_sample_tag | True |
| c14_layer_tag | - |
| avg_coverage | - |
| sequence_source | bam |
| reference | Skoglund et al. 2014. Genomic Diversity and Admixture Differs for Stone-Age Scandinavian Foragers and Farmers. Science, 344(6185), 747-750. (link) |
| data_link | https://www.ebi.ac.uk/ena/data/view/PRJEB6090 |
| ychr_snps | - |
| mitopathos | [{'allele': '10398G', 'position': 10398, 'status': 'Reported / lineage L & M marker / also hg IJK', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND3'], 'diseases': ['PD protective factor / longevity / altered cell pH / metabolic syndrome / breast cancer risk / Leigh Syndrome risk / ADHD / cognitive decline / SCA2 age of onset / Fuchs endothelial corneal dystrophy']}, {'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '9055A', 'position': 9055, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ATP6'], 'diseases': ['PD protective factor']}] |
GOK5
