I0012

FASTA

Metadata

Reference

Data

identifier	I0012
alternative_identifiers	['Motala2']
country	Sweden
continent	Europe
region	Scandinavia
culture	Motala_HG
epoch	Mesolithic
group	HGN
comment	-
latitude	58.540000915527344
longitude	15.050000190734863
sex	M
site	Motala, Kanaljorden
site_detail	-
mt_hg	U2e1
ychr_hg	I2c
year_from	-5714
year_to	-5575
date_detail	5714-5575 calBCE (6734±30 BP, Ua-51722)
bp	6734±30
c14_lab_code	Ua-51722
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Haak et al. 2015. Massive migration from the steppe was a source for Indo-European languages in Europe. Nature, 522(7555), 207-211. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB8448
ychr_snps	['I2c:L597:18887888T->A', 'I2c:PF3893:8571993T->C', 'I2c:S6631:8634040C->A', 'I:CTS1800:14073053G->A', 'I:CTS6265:16780748C->G', 'I:CTS10941:22845794A->G', 'I:CTS11540:23156725C->T', 'I:FGC2413:8262092C->T', 'I:FGC2415:13835003T->C', 'I:FI2:8382265C->G', 'I:L503:21359407C->G', 'I:L758:8536868C->G', 'I:L1197:14974451C->T', 'I:PF3627.2:6662712C->T', 'I:PF3640:7681156T->A', 'I:PF3641:7688470T->C', 'I:PF3660:8466652G->A', 'I:PF3661:8484606C->A', 'I:PF3796:21119888G->T', 'I:PF3833:22485425A->T', 'I:CTS6231:16751000C->T', 'I2c:FGC18140:28707130A->G', 'I2c:L596:14197631G->Ahet', 'I2:PF3664:8567995G->A', 'I:CTS88:2723755G->A', 'I:CTS3076:14646409C->T', 'I:CTS3517:14986989T->G', 'I:CTS4340:15595624G->A', 'I:CTS5946:16567253A->G', 'I:CTS6497:16939794A->T', 'I:CTS8742:18172947A->G', 'I:CTS8876:18257568G->A', 'I:CTS9860:19104986G->A', 'I:CTS11441:23113271C->G', 'I:CTS11979:23401471C->T', 'I:FGC2414:21155653C->T', 'I:FGC2416:7642823G->T', 'I:FGC7049:22459264G->A', 'I:L41:19048602G->A', 'I:L772:15615533C->A', 'I:L847:23154034C->T', 'I:M1460:21862684A->C', 'I:P38:14484379A->C', 'I:P212:3545070T->A', 'I:PF3797:21130059A->G', 'I:PF3800:21402723A->G', 'I:PF3806:21525069G->A', 'I:PF3814:21839183A->G', 'I:PF3815:21841289G->T', 'I:PF3817:21939618G->A', 'I:PF3828:22458430C->Thet', 'I:PF3829:22458740A->G', 'I:PF3836:22525421T->G', 'I:Z16985:13804066G->C', 'I:Z16987:22243817A->G']
mitopathos	[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '16189C', 'position': 16189, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Diabetes / Cardiomyopathy /cancer risk / mtDNA copy nbr / Metabolic Syndrome / Melanoma patients']}]