I0013

FASTA

Metadata

Reference

Data

identifier	I0013
alternative_identifiers	['Motala3']
country	Sweden
continent	Europe
region	Scandinavia
culture	Motala_HG
epoch	Mesolithic
group	HGN
comment	-
latitude	58.540000915527344
longitude	15.050000190734863
sex	M
site	Motala, Kanaljorden
site_detail	-
mt_hg	U5a1
ychr_hg	I2a1b
year_from	-5964
year_to	-5638
date_detail	5964-5638 calBCE (6877±69 BP, Ua-42117)
bp	6877±69
c14_lab_code	Ua-42117
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Haak et al. 2015. Massive migration from the steppe was a source for Indo-European languages in Europe. Nature, 522(7555), 207-211. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB8448
ychr_snps	['I:Z16987:22243817A->Ghet', 'I:L41:19048602G->A', 'I:P38:14484379A->C', 'I:P212:3545070T->A', 'I:PF3814:21839183A->G', 'I2a1b:M423:19096091G->A', 'I2a1:P37.2:14491684T->C']
mitopathos	[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '16192T', 'position': 16192, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '16270T', 'position': 16270, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '5460A', 'position': 5460, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-ND2'], 'diseases': ['AD / PD / LHON']}]