I0017

FASTA

Metadata

Reference

Data

identifier	I0017
alternative_identifiers	['Motala12']
country	Sweden
continent	Europe
region	Scandinavia
culture	Motala_HG
epoch	Mesolithic
group	HGN
comment	-
latitude	58.540000915527344
longitude	15.050000190734863
sex	M
site	Motala, Kanaljorden
site_detail	-
mt_hg	U2e1
ychr_hg	I2a1b2a1
year_from	-5721
year_to	-5631
date_detail	5721-5631 calBCE (6773±30 BP, Ua-51723)
bp	6773±30
c14_lab_code	Ua-51723
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Haak et al. 2015. Massive migration from the steppe was a source for Indo-European languages in Europe. Nature, 522(7555), 207-211. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB8448
ychr_snps	['I2:M438:16638804A->G', 'I:CTS1800:14073053G->A', 'I:CTS2193:14214481G->T', 'I:CTS2387:14286853T->C', 'I:CTS2514:14337364T->C', 'I:CTS2536:14352669G->A', 'I:CTS4273:15536870C->T', 'I:CTS7831:17692855T->A', 'I:CTS8963:18582617C->T', 'I:CTS10058:19233673A->G', 'I:CTS10941:22845794A->G', 'I:CTS11540:23156725C->T', 'I:FGC2412:21689728A->G', 'I:FGC2413:8262092C->T', 'I:FI2:8382265C->G', 'I:L503:21359407C->G', 'I:L578:8267857G->A', 'I:L758:8536868C->G', 'I:L846:7856500C->T', 'I:L1197:14974451C->T', 'I:PF3627.2:6662712C->T', 'I:PF3640:7681156T->A', 'I:PF3641:7688470T->C', 'I:PF3660:8466652G->A', 'I:PF3661:8484606C->A', 'I:PF3665:8643763A->G', 'I:PF3796:21119888G->T', 'I:PF3833:22485425A->T', 'I:YSC0000272:22115103G->A', 'I:Z16987:22243817A->Ghet', 'I:FI4:8873160G->T', 'I:M258:15023364T->C', 'I:CTS3517:14986989T->G', 'I:CTS4340:15595624G->A', 'I:CTS5946:16567253A->G', 'I:CTS6497:16939794A->T', 'I:CTS8876:18257568G->A', 'I:CTS9860:19104986G->A', 'I:CTS11979:23401471C->T', 'I:FGC2414:21155653C->T', 'I:FGC2416:7642823G->T', 'I:FGC7049:22459264G->A', 'I:L41:19048602G->A', 'I:L772:15615533C->A', 'I:P38:14484379A->C', 'I:P212:3545070T->A', 'I:PF3800:21402723A->G', 'I:PF3814:21839183A->G', 'I:PF3817:21939618G->A', 'I:PF3829:22458740A->G', 'I:PF3836:22525421T->G', 'I:Z16985:13804066G->C', 'I2a1b:M423:19096091G->A', 'I2a1:P37.2:14491684T->C', 'I2a:L460:7879415A->C', 'I2:L68:18700150C->T', 'I:CTS4848:15862842C->T', 'I:CTS7540:17525137A->G', 'I:CTS8333:17940414G->A', 'I:FI3:8485677C->A', 'I:L844.1:2884029T->C', 'I:PF3742:16354708G->A', 'I2a1b2a1:L147.2:6753258T->C', 'I2a1b:CTS1293:7317227G->A', 'I2a1b:CTS7218:17359886A->C', 'I2a1b:L178:15574052G->A', 'I:CTS1301:7321418C->T', 'I:CTS3641:15089989T->C', 'I:CTS5650:16415916A->G', 'I:CTS8345:17949402C->G', 'I:CTS11779:23267211G->A', 'I:FGC2415:13835003T->Chet', 'I:FGC7050:22479907A->T', 'I:PF3687:13610767C->T', 'I:PF3811:21627180C->T', 'I:PF3828:22458430C->T', 'I:PF3837:22573702G->A']
mitopathos	[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '16189C', 'position': 16189, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Diabetes / Cardiomyopathy /cancer risk / mtDNA copy nbr / Metabolic Syndrome / Melanoma patients']}]