I0056

identifier	I0056
alternative_identifiers	['HAL14']
country	Germany
continent	Europe
region	central Europe
culture	Linear Pottery
epoch	Neolithic
group	LBK
comment	-
latitude	51.88999938964844
longitude	11.039999961853027
sex	M
site	Halberstadt-Sonntagsfeld
site_detail	-
mt_hg	T2b
ychr_hg	G2a2a
year_from	-5212
year_to	-5006
date_detail	5212-5006 calBCE (MAMS-21480)
bp	-
c14_lab_code	-
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Haak et al. 2015. Massive migration from the steppe was a source for Indo-European languages in Europe. Nature, 522(7555), 207-211. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB8448
ychr_snps	['PF3147', 'PF3175', 'PF3181']
mitopathos	[{'allele': '11251G', 'position': 11251, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-ND4'], 'diseases': ['Reduced risk of PD']}, {'allele': '15928A', 'position': 15928, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-TT'], 'diseases': ['Multiple Sclerosis / idiopathic repeat miscarriage / AD protection']}, {'allele': '4216C', 'position': 4216, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND1'], 'diseases': ['LHON / Insulin Resistance /possible adaptive high altitude variant / miscarriage']}, {'allele': '4917G', 'position': 4917, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND2'], 'diseases': ['LHON / Insulin Resistance / AMD / NRTI-PN']}]