I0099

FASTA

Metadata

Reference

Data

identifier	I0099
alternative_identifiers	['HAL36C']
country	Germany
continent	Europe
region	central Europe
culture	Urnfield
epoch	Bronze Age
group	BAGe
comment	-
latitude	51.900001525878906
longitude	11.050000190734863
sex	M
site	Halberstadt-Sonntagsfeld
site_detail	-
mt_hg	H23
ychr_hg	R1a1a1b1a2
year_from	-1193
year_to	-979
date_detail	1193-979 calBCE (2889±30 BP, MAMS-21484)
bp	2889±30
c14_lab_code	MAMS-21484
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Lipson et al. 2017. Parallel palaeogenomic transects reveal complex genetic history of early European farmers. Nature, 551(7680), 368-372. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB22629
ychr_snps	['R1a1a1:Page7:14498990C->T', 'R1a1a:L168:16202177A->G', 'R1a1:M459:6906074A->G', 'R:CTS3622:15078469C->G', 'R:F459:18017528G->T', 'R:L1347:22818334C->T', 'R:M764:21263029G->A', 'R1:CTS2565:14366723C->T', 'R1:CTS2908:14556851C->T', 'R1:CTS5611:16394489T->G', 'R1:L875:16742224A->G', 'R1:P245:8633545T->C', 'R1:P286:17716251C->T', 'R:CTS8311:17930099C->A', 'R:F82:7548900G->A', 'R:M651:9889199G->A', 'R:P280:21843090C->G', 'R:P285:19267344C->A', 'R1:P234:21117888T->C', 'R:P224:17285993C->T', 'R1:CTS3321:14829196C->T', 'R1a1a1:M417:8533735G->A', 'R1a1a:M198:15030752C->T', 'R1a1a:M512:16315153C->T', 'R1a1a:M515:14054623T->A', 'R1a1:Page65.2:2657176C->T', 'R1a:L63:18162834T->C', 'R1a:L145:14138745C->A', 'R1:M306:22750583C->A', 'R1:P231:9989615A->G', 'R1:P236:17782178C->G', 'R1:P238:7771131G->A', 'R1:P294:7570822G->C', 'R:CTS7876:17722802G->A', 'R:CTS7880:17723850C->T', 'R:F33:6701239G->A', 'R:F63:7177189G->A', 'R:F295:15594523A->G', 'R:F356:16629782T->C', 'R:F652:23631629C->A', 'R:FGC1168:15667208G->C', 'R:L1225:22733758C->G', 'R:M734:18066156C->T', 'R:M760:21219443A->G', 'R:M799:23134896C->T', 'R:P227:21409706G->C', 'R:F370:16856357T->C', 'R1:CTS3123:14674176A->C', 'R1:P225:15590342G->T', 'R:CTS11075:22934109A->G', 'R1:F102:7854412A->G', 'R1a1a1b:S224:8245045C->T', 'R1a1a1b:S441:7683058G->A', 'R1:CTS7085:17275703G->A', 'R1a1a1b1a2:S204:16474793G->A', 'R1a1a1b1a:S198:15588401T->C', 'R1a1a1b1:PF6217:21976303T->A', 'R1a:L62:17891241A->Ghet', 'R:CTS6417:16882568T->Chet']
mitopathos	-