I0116

FASTA

Metadata

Reference

Data

identifier I0116
alternative_identifiers ['ESP4']
country Germany
continent Europe
region central Europe
culture Únětice
epoch Bronze Age
group UNC
comment -
latitude 51.41999816894531
longitude 11.680000305175781
sex M
site Esperstedt
site_detail -
mt_hg W3a1
ychr_hg I2c
year_from -2134
year_to -1939
date_detail 2134-1939 calBCE (3650±32 BP, MAMS-21495)
bp 3650±32
c14_lab_code MAMS-21495
c14_sample_tag True
c14_layer_tag -
avg_coverage -
sequence_source bam
reference Haak et al. 2015. Massive migration from the steppe was a source for Indo-European languages in Europe. Nature, 522(7555), 207-211. (link)
data_link https://www.ebi.ac.uk/ena/data/view/PRJEB8448
ychr_snps ['I2c:L597:18887888T->A', 'I2c:PF3893:8571993T->C', 'I2c:S6631:8634040C->A', 'I2:M438:16638804A->G', 'I:CTS8420:18018313C->A', 'I:FI2:8382265C->G', 'I:L503:21359407C->G', 'I:L578:8267857G->A', 'I:L758:8536868C->G', 'I:PF3627.2:6662712C->T', 'I:PF3660:8466652G->A', 'I:PF3661:8484606C->A', 'I:Z16987:22243817A->Ghet', 'I2:PF3664:8567995G->A', 'I:CTS5946:16567253A->G', 'I:CTS8876:18257568G->A', 'I:CTS11441:23113271C->G', 'I:FGC2416:7642823G->T', 'I:FGC7049:22459264G->A', 'I:L41:19048602G->A', 'I:M1460:21862684A->C', 'I:PF3800:21402723A->G', 'I:PF3814:21839183A->G', 'I:PF3817:21939618G->A', 'I:PF3829:22458740A->G', 'I:CTS7540:17525137A->G', 'I:CTS5650:16415916A->G', 'I:PF3687:13610767C->T', 'I:PF3811:21627180C->T', 'I:PF3828:22458430C->T', 'I:PF3837:22573702G->A', 'I2c:M3934:23566624T->C', 'I2c:PF3929:22861120A->G', 'I:CTS3383:14884646C->T', 'I:CTS5263:16171560G->A', 'I:CTS7329:17424807C->T', 'I:CTS8545:18078759T->A', 'I:L755:8465165C->T', 'I:M11064:7244075A->G', 'I:PF3611:5586317G->C', 'I:PF3617:5925267G->A']
mitopathos [{'allele': '12705T', 'position': 12705, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CO1'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '15784C', 'position': 15784, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CYB'], 'diseases': ['POAG - potential for association']}, {'allele': '195C', 'position': 195, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['BD-associated / melanoma pts']}, {'allele': '5460A', 'position': 5460, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-ND2'], 'diseases': ['AD / PD / LHON']}, {'allele': '6267A', 'position': 6267, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CO1'], 'diseases': ['Prostate Cancer']}]