I0122

FASTA

Metadata

Reference

Data

identifier	I0122
alternative_identifiers	['SVP35']
country	Russia
continent	Europe
region	Pontic steppe
culture	Samara_Eneolithic
epoch	Bronze Age
group	YAM
comment	-
latitude	52.220001220703125
longitude	48.099998474121094
sex	M
site	Khvalynsk, Volga River, Samara
site_detail	Site II
mt_hg	H2a1
ychr_hg	R1b1a
year_from	-5200
year_to	-4000
date_detail	5200-4000 BCE
bp	-
c14_lab_code	-
c14_sample_tag	-
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Mathieson et al. 2015. Genome-wide patterns of selection in 230 ancient Eurasians. Nature, 528(7583), 499-503. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB11450
ychr_snps	['R1:L875:16742224A->G', 'R1:P286:17716251C->T', 'R:M651:9889199G->A', 'R:P280:21843090C->G', 'R1b1a:CTS4244:15510064T->G', 'R1b1a:FGC36:13822833G->T', 'R1:CTS3321:14829196C->T', 'R1:M306:22750583C->A', 'R1:P294:7570822G->C', 'R:F652:23631629C->A', 'R:M734:18066156C->T', 'R:P227:21409706G->C', 'R:F370:16856357T->C', 'R1b1a:PF6271:23984056G->A', 'R1b1a:A702:10038192G->A', 'R1b1a:PF6263:21159055C->A', 'R1b1:CTS2134:14193384G->A', 'R1b1:M415:9170545C->A', 'R1b1:CTS2229:14226692T->A', 'R1b1a:FGC35:18407611C->T']
mitopathos	[{'allele': '15168A', 'position': 15168, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-CYB'], 'diseases': ['EXIT']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '3551T', 'position': 3551, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND1'], 'diseases': ['LHON']}, {'allele': '602T', 'position': 602, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-TF'], 'diseases': ['Axial myopathy with encephalopathy']}, {'allele': '6285A', 'position': 6285, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CO1'], 'diseases': ['Prostate Cancer']}]