| identifier |
I0124 |
| alternative_identifiers |
['SVP44'] |
| country |
Russia |
| continent |
Europe |
| region |
Pontic steppe |
| culture |
Hunter-Gatherer |
| epoch |
Mesolithic |
| group |
HGE |
| comment |
- |
| latitude |
53.400001525878906 |
| longitude |
50.400001525878906 |
| sex |
M |
| site |
Lebyanzhinka, Sok River, Samara |
| site_detail |
Site IV |
| mt_hg |
U5a1d |
| ychr_hg |
R1b1a1a |
| year_from |
-5657 |
| year_to |
-5541 |
| date_detail |
5657-5541 calBCE (6680±30 BP, Beta-392490) |
| bp |
6680±30 |
| c14_lab_code |
Beta-392490 |
| c14_sample_tag |
True |
| c14_layer_tag |
- |
| avg_coverage |
- |
| sequence_source |
bam |
| reference |
Haak et al. 2015. Massive migration from the steppe was a source for Indo-European languages in Europe. Nature, 522(7555), 207-211.
(link)
|
| data_link |
https://www.ebi.ac.uk/ena/data/view/PRJEB8448
|
| ychr_snps |
['R:L1347:22818334C->T', 'R1b1a:CTS4244:15510064T->G', 'R1b1:PF6272:23992762C->A', 'R1b1a:FGC36:13822833G->T', 'R1:CTS3321:14829196C->T', 'R1:M173:15026424A->C', 'R1:P236:17782178C->G', 'R1:P242:7647357G->A', 'R1:P294:7570822G->C', 'R:CTS5815:16491135C->T', 'R:CTS6417:16882568T->C', 'R:CTS7876:17722802G->A', 'R:FGC1168:15667208G->C', 'R:M207:15581983A->G', 'R:P227:21409706G->C', 'R1b1:L1349:22722580T->C', 'R1b1a1a:CTS3876:15239181G->C', 'R1b1a1a:CTS5082:16005138A->C', 'R1b1a1a:CTS7904:17732408T->C', 'R1b1a1a:L502:19020340G->C', 'R1b1a:CTS8612:18109555C->A', 'R1b1a:L1068:21528257T->C', 'R1b1a:PF6271:23984056G->A', 'R1b1:L278:18914441C->T', 'R1b1:PF6248:8110520T->A', 'R1b:M343:2887824C->A']
|
| mitopathos |
[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '16192T', 'position': 16192, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '16270T', 'position': 16270, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}]
|