I0172

FASTA

Metadata

Reference

Data

identifier I0172
alternative_identifiers ['SG7', 'ESP24']
country Germany
continent Europe
region central Europe
culture Bernburg
epoch Neolithic
group BEC
comment -
latitude 51.41999816894531
longitude 11.680000305175781
sex M
site Esperstedt
site_detail -
mt_hg T2b
ychr_hg I2a1b1a1
year_from -3360
year_to -3086
date_detail 3360-3086 calBCE (4502±48 BP, Erl-8699)
bp 4502±48
c14_lab_code Erl-8699
c14_sample_tag True
c14_layer_tag -
avg_coverage 1182.4554443359375
sequence_source bam
reference Haak et al. 2015. Massive migration from the steppe was a source for Indo-European languages in Europe. Nature, 522(7555), 207-211. (link)
data_link https://www.ebi.ac.uk/ena/data/view/PRJEB8448
ychr_snps ['I2:M438:16638804A->G', 'I:CTS48:2688442T->A', 'I:CTS674:6943522C->T', 'I:CTS1800:14073053G->A', 'I:CTS2193:14214481G->T', 'I:CTS2514:14337364T->C', 'I:CTS2536:14352669G->A', 'I:CTS4088:15389836T->C', 'I:CTS4209:15479899T->A', 'I:CTS4273:15536870C->T', 'I:CTS5764:16471254A->G', 'I:CTS6265:16780748C->G', 'I:CTS7469:17497181C->A', 'I:CTS7831:17692855T->A', 'I:CTS8420:18018313C->A', 'I:CTS8963:18582617C->T', 'I:CTS10058:19233673A->G', 'I:CTS11540:23156725C->T', 'I:FGC2412:21689728A->G', 'I:FGC2413:8262092C->T', 'I:FGC2415:13835003T->C', 'I:FI2:8382265C->G', 'I:L503:21359407C->G', 'I:L578:8267857G->A', 'I:L758:8536868C->G', 'I:L846:7856500C->T', 'I:L1197:14974451C->T', 'I:PF3627.2:6662712C->T', 'I:PF3640:7681156T->A', 'I:PF3641:7688470T->C', 'I:PF3660:8466652G->A', 'I:PF3661:8484606C->A', 'I:PF3665:8643763A->G', 'I:PF3794:21067903C->T', 'I:Z16987:22243817A->Ghet', 'I:CTS6231:16751000C->T', 'I:FI4:8873160G->T', 'I:M258:15023364T->C', 'I2:PF3664:8567995G->A', 'I:CTS88:2723755G->A', 'I:CTS3076:14646409C->T', 'I:CTS3517:14986989T->G', 'I:CTS5946:16567253A->G', 'I:CTS6497:16939794A->T', 'I:CTS8742:18172947A->G', 'I:CTS8876:18257568G->A', 'I:CTS9860:19104986G->A', 'I:CTS11441:23113271C->G', 'I:CTS11979:23401471C->T', 'I:FGC2416:7642823G->T', 'I:FGC7049:22459264G->A', 'I:L41:19048602G->A', 'I:L772:15615533C->A', 'I:L847:23154034C->T', 'I:M1460:21862684A->C', 'I:P38:14484379A->C', 'I:P212:3545070T->A', 'I:PF3806:21525069G->A', 'I:PF3814:21839183A->G', 'I:PF3815:21841289G->T', 'I:PF3817:21939618G->A', 'I:PF3829:22458740A->G', 'I:PF3836:22525421T->G', 'I2a1b:M423:19096091G->A', 'I2a1:P37.2:14491684T->C', 'I2a:L460:7879415A->C', 'I2:L68:18700150C->T', 'I:CTS646:6926038T->A', 'I:CTS4848:15862842C->T', 'I:CTS4982:15937959C->T', 'I:CTS7540:17525137A->G', 'I:CTS7593:17548890G->A', 'I:CTS8333:17940414G->A', 'I:FI3:8485677C->A', 'I:L844.1:2884029T->C', 'I:PF3742:16354708G->A', 'I2a1b:CTS1293:7317227G->A', 'I2a1b:CTS7218:17359886A->C', 'I2a1b:L178:15574052G->A', 'I:CTS1301:7321418C->T', 'I:CTS3641:15089989T->C', 'I:CTS5650:16415916A->G', 'I:CTS8345:17949402C->G', 'I:FGC7050:22479907A->T', 'I:PF3687:13610767C->T', 'I:PF3828:22458430C->T', 'I:PF3837:22573702G->A', 'I:CTS7329:17424807C->T', 'I:CTS8545:18078759T->A', 'I:M11064:7244075A->G', 'I:CTS6343:16836079C->A', 'I:CTS6344:16836548G->A', 'I:CTS9269:18789763C->T', 'I:PF3649:8046731A->C', 'I:PF3666:8728974T->G', 'I:PF3670:8984184A->G', 'I:PF3864:7898045A->G', 'I:L751:18394743A->G', 'I:PF3803:21452125A->G', 'I:CTS6334:16826642G->A', 'I:PF3642:7712917A->T', 'I:PF3645:7853028C->A', 'I:CTS9618:18992894T->C', 'I2a1b1a1:S2703:17361387C->A', 'I2a1b1a:L1498:18668472C->T', 'I2a1b1:L161.1:22513718C->T', 'I2a1b:CTS176:2785672A->G', 'I2a1b:CTS1802:14074218A->T', 'I2a1b:CTS5375:16233135A->G', 'I2a1b:CTS5985:16594452A->G', 'I2a1b:CTS8239:17893806A->G', 'I2a1b:CTS8486:18049134C->T', 'I2a1b:CTS11030:22905944G->C', 'I:CTS4272:15536759T->C', 'I:CTS4637:15742130C->A', 'I:CTS5150:16039881C->T', 'I:CTS5908:16548548G->A', 'I:CTS7026:17245841T->C', 'I:CTS7502:17511797A->Ghet', 'I:FGC2417:10051801G->Ahet', 'I:FGC2447:4180074C->T', 'I:PF3612:5643555T->G', 'I:PF3807:21535086G->A', 'I:PF3819:22100087T->C', 'I:Z16985:13804066G->Chet']
mitopathos -