I0231

FASTA

Metadata

Reference

Data

identifier	I0231
alternative_identifiers	['SVP3']
country	Russia
continent	Europe
region	Pontic steppe
culture	Yamnaya
epoch	Bronze Age
group	YAM
comment	-
latitude	52.41999816894531
longitude	48.2400016784668
sex	M
site	Ekaterinovka, Southern Steppe, Samara
site_detail	-
mt_hg	U4a1a or U4a1d
ychr_hg	R1b1a1a2a2
year_from	-2921
year_to	-2762
date_detail	2921-2762 calBCE (4260±30 BP, Beta-392487)
bp	4260±30
c14_lab_code	Beta-392487
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Haak et al. 2015. Massive migration from the steppe was a source for Indo-European languages in Europe. Nature, 522(7555), 207-211. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB8448
ychr_snps	['R:CTS3622:15078469C->G', 'R:L1347:22818334C->T', 'R:M613:7133986G->C', 'R:M764:21263029G->A', 'R1:CTS2565:14366723C->T', 'R1:CTS2908:14556851C->T', 'R1:CTS5611:16394489T->G', 'R1:L875:16742224A->G', 'R1:P245:8633545T->C', 'R1:P286:17716251C->T', 'R:CTS207:2810583A->G', 'R:CTS8311:17930099C->A', 'R:F82:7548900G->A', 'R:M651:9889199G->A', 'R:M718:17334694G->T', 'R:P280:21843090C->G', 'R:P285:19267344C->A', 'R1b1a1a2:L150.1:10008791C->T', 'R1b1a:CTS4244:15510064T->G', 'R1:P234:21117888T->C', 'R:P224:17285993C->T', 'R1b1a:FGC36:13822833G->T', 'R1b1a:L754:22889018G->A', 'R1b1a:L761:16773870A->G', 'R1:CTS3321:14829196C->T', 'R1:CTS997:7132713G->A', 'R1:CTS1913:14120054A->T', 'R1:CTS8116:17839981G->A', 'R1:M173:15026424A->C', 'R1:M306:22750583C->A', 'R1:P231:9989615A->G', 'R1:P233:21166358T->G', 'R1:P236:17782178C->G', 'R1:P238:7771131G->A', 'R1:P294:7570822G->C', 'R:CTS5815:16491135C->T', 'R:CTS6417:16882568T->C', 'R:F33:6701239G->A', 'R:F63:7177189G->A', 'R:F295:15594523A->G', 'R:F356:16629782T->C', 'R:F652:23631629C->A', 'R:FGC1168:15667208G->C', 'R:L1225:22733758C->G', 'R:M734:18066156C->T', 'R:M760:21219443A->G', 'R:P227:21409706G->C', 'R:CTS2913:14561760A->G', 'R:F370:16856357T->C', 'R1b1:L1349:22722580T->C', 'R1:CTS3123:14674176A->C', 'R1b1a1a:CTS3876:15239181G->C', 'R1b1a1a:CTS7904:17732408T->C', 'R1b1a1a:L502:19020340G->C', 'R1b1a:L1068:21528257T->C', 'R1b1a:PF6271:23984056G->A', 'R1b1:L278:18914441C->T', 'R1b:M343:2887824C->A', 'R1:P225:15590342G->T', 'R:P229:8050994G->C', 'R:P232:23035132G->A', 'R1b1a1a:CTS5577:16376495A->C', 'R1b1a1a:CTS9018:18617596C->T', 'R:CTS3229:14750668A->C', 'R1b1a1a2:CTS623:6912992T->G', 'R1b1a1a2:CTS8591:18095336A->C', 'R1b1a1a2:CTS11468:23124367G->T', 'R1b1a1a2:L265:8149348A->G', 'R1b1a1a2:L773:7220727A->G', 'R1b1a1a2:PF6475:17986687C->A', 'R1b1a1a2:PF6482:18381735A->G', 'R1b1a1a2:PF6495:20828795G->A', 'R1b1a1a2:PF6505:21784286G->A', 'R1b1a1a2:PF6509:22190371A->G', 'R1b1a1a:CTS11985:23403749G->A', 'R1b1a1a:FGC57:7759944G->A', 'R1b1a1a:PF6463:16183412C->A', 'R1b1a:A702:10038192G->A', 'R1b1a:CTS7585:17545608G->T', 'R1b1a:PF6263:21159055C->A', 'R1b1:CTS2134:14193384G->A', 'R1b1:L780:21183643A->G', 'R1b1:L822:7960019G->A', 'R1b1:M415:9170545C->A', 'R1b1a1a2a2:Z2105:15747432C->A', 'R1b1a1a2:PF6494:20811307G->A', 'R1b1a1a2a2:CTS1078:7186135G->C', 'R1b1a1a2a2:M12149:14629851G->A', 'R1b1a1a2a:L23:6753511G->A', 'R1b1a1a2:CTS8728:18167403C->T', 'R1b1a1a2:CTS10834:22796697T->C', 'R1b1a1a2:L482:7863189G->A', 'R1b1a1a2:M269:22739367T->C', 'R1b1a1a2:PF6399:2668456C->T', 'R1b1a1a2:PF6409:4352151G->A', 'R1b1a1a2:PF6434:8411202A->G', 'R1b1a1a2:PF6438:9464078C->T', 'R1b1a1a2:PF6500:21410840G->T', 'R1b1a1a:PF6451:14116584T->A', 'R1b1a1a:PF6498:21312064C->A', 'R1b1a1a:PF6501:21447844A->T', 'R1b1a1a:PF6524:23452965T->C', 'R1b1a:CTS3063:14637352T->C', 'R1b1a:CTS8436:18026855G->A', 'R1b1a:FGC41:7900883C->A', 'R1b1a:L1345:21558298G->T', 'R1b1:CTS910:7081561C->T', 'R1:F102:7854412A->G', 'R1b1a1a2:PF6432:8194310C->A', 'R1b1a:FGC35:18407611C->T', 'R1b1a:PF6249:8214827C->T', 'R1b1:CTS5676:16426937C->G', 'R1:CTS916:7084535G->A', 'R1:CTS7085:17275703G->A', 'R:M628:8027859G->C', 'R1b1a1a2:M520:4446430T->A', 'R1b1:PF6270:23845409T->C', 'R1b1a1a2a2:S20902:18383837C->T', 'R1b1a1a2:CTS8665:18137831T->C', 'R1b1a1a2:PF6411:5166408A->G', 'R1b1a1:L389:28733101C->G', 'R1b1a:CTS3794:15184385C->G', 'R1b1:L506:21995972T->A']
mitopathos	[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '15693C', 'position': 15693, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CYB'], 'diseases': ['Possibly LVNC cardiomyopathy-associated']}, {'allele': '195C', 'position': 195, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['BD-associated / melanoma pts']}, {'allele': '499A', 'position': 499, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Endometriosis']}]