I0232

FASTA

Metadata

Reference

Data

identifier	I0232
alternative_identifiers	['SVP12']
country	Russia
continent	Europe
region	Pontic steppe
culture	Srubnaya
epoch	Bronze Age
group	SRU
comment	-
latitude	48.099998474121094
longitude	54.439998626708984
sex	M
site	Novoselki, Northern Forest, Samara
site_detail	-
mt_hg	U5a1f2
ychr_hg	R1a1a1b2
year_from	-1850
year_to	-1200
date_detail	1850-1200 BCE
bp	-
c14_lab_code	-
c14_sample_tag	-
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Mathieson et al. 2015. Genome-wide patterns of selection in 230 ancient Eurasians. Nature, 528(7583), 499-503. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB11450
ychr_snps	['R1a1a1:Page7:14498990C->T', 'R1a1a:L168:16202177A->G', 'R:CTS3622:15078469C->G', 'R:F459:18017528G->T', 'R:L1347:22818334C->T', 'R:M613:7133986G->C', 'R:M764:21263029G->A', 'R1:CTS2565:14366723C->T', 'R1:CTS2908:14556851C->T', 'R1:CTS5611:16394489T->G', 'R1:L875:16742224A->G', 'R1:P245:8633545T->C', 'R1:P286:17716251C->T', 'R:CTS207:2810583A->G', 'R:CTS2426:14300457G->A', 'R:CTS8311:17930099C->A', 'R:CTS11647:23202551C->G', 'R:F82:7548900G->A', 'R:M651:9889199G->A', 'R:P280:21843090C->G', 'R:P285:19267344C->A', 'R1:P234:21117888T->C', 'R:L747:16615413G->T', 'R:P224:17285993C->T', 'R1:CTS3321:14829196C->T', 'R1a1a1:M417:8533735G->A', 'R1a1a:M198:15030752C->T', 'R1a1a:M512:16315153C->T', 'R1a1a:M515:14054623T->A', 'R1a1:Page65.2:2657176C->T', 'R1a:L62:17891241A->G', 'R1a:L63:18162834T->C', 'R1a:L145:14138745C->A', 'R1a:L146:23473201T->A', 'R1:CTS997:7132713G->A', 'R1:CTS8116:17839981G->A', 'R1:F93:7671535C->T', 'R1:M173:15026424A->C', 'R1:M306:22750583C->A', 'R1:P231:9989615A->G', 'R1:P233:21166358T->G', 'R1:P236:17782178C->G', 'R1:P238:7771131G->A', 'R1:P242:7647357G->A', 'R1:P294:7570822G->C', 'R:CTS5815:16491135C->T', 'R:CTS6417:16882568T->C', 'R:CTS7876:17722802G->A', 'R:CTS7880:17723850C->T', 'R:F33:6701239G->A', 'R:F63:7177189G->A', 'R:F295:15594523A->G', 'R:F356:16629782T->C', 'R:F652:23631629C->A', 'R:FGC1168:15667208G->C', 'R:L1225:22733758C->G', 'R:M207:15581983A->G', 'R:M734:18066156C->T', 'R:M760:21219443A->G', 'R:P227:21409706G->C', 'R:CTS2913:14561760A->G', 'R:CTS10663:22687547A->T', 'R:F370:16856357T->C', 'R:F765:24360964G->A', 'R1:CTS3123:14674176A->C', 'R1:P225:15590342G->T', 'R:F154:8558505T->C', 'R:P229:8050994G->C', 'R:P232:23035132G->A', 'R:CTS9005:18611644A->T', 'R:CTS11075:22934109A->G', 'R1:F102:7854412A->G', 'R1a1a1b:S224:8245045C->T', 'R1a1a1b:S441:7683058G->A', 'R1a1a1b2:F992:7552356G->A', 'R1:CTS916:7084535G->A', 'R1:CTS7085:17275703G->A', 'R1a1:M459:6906074A->Ghet']
mitopathos	[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '16192T', 'position': 16192, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '16270T', 'position': 16270, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}]