I0370

FASTA

Metadata

Reference

Data

identifier	I0370
alternative_identifiers	['SVP10']
country	Russia
continent	Europe
region	Pontic steppe
culture	Yamnaya
epoch	Bronze Age
group	YAM
comment	-
latitude	51.27000045776367
longitude	58.18000030517578
sex	M
site	Ishkinovka, Eastern Orenburg, Pre-Ural steppe, Samara
site_detail	Site I
mt_hg	H13a1a1
ychr_hg	R1b1a1a2a2
year_from	-3300
year_to	-2700
date_detail	3300-2700 BCE
bp	-
c14_lab_code	-
c14_sample_tag	-
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Haak et al. 2015. Massive migration from the steppe was a source for Indo-European languages in Europe. Nature, 522(7555), 207-211. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB8448
ychr_snps	['R:L1347:22818334C->T', 'R1:CTS2565:14366723C->T', 'R1:CTS2908:14556851C->T', 'R1:CTS5611:16394489T->G', 'R1:L875:16742224A->G', 'R:CTS2426:14300457G->A', 'R:CTS8311:17930099C->A', 'R:F82:7548900G->A', 'R:M651:9889199G->A', 'R:P280:21843090C->G', 'R1b1a1a2:L150.1:10008791C->T', 'R1b1a:CTS4244:15510064T->G', 'R1b1a:FGC36:13822833G->T', 'R1:CTS3321:14829196C->T', 'R1:CTS997:7132713G->A', 'R1:P236:17782178C->G', 'R:CTS5815:16491135C->T', 'R:F33:6701239G->A', 'R:F63:7177189G->A', 'R:F295:15594523A->G', 'R:F356:16629782T->C', 'R:F652:23631629C->A', 'R:FGC1168:15667208G->C', 'R:M734:18066156C->T', 'R:M760:21219443A->G', 'R:F370:16856357T->C', 'R1b1a1a:CTS3876:15239181G->C', 'R1b1a1a:CTS5082:16005138A->C', 'R1b1a1a:CTS7904:17732408T->C', 'R1b1a:CTS8612:18109555C->A', 'R1b1a:PF6271:23984056G->A', 'R1b1:L278:18914441C->T', 'R1b:M343:2887824C->A', 'R1b1a1a:CTS9018:18617596C->T', 'R:CTS11075:22934109A->G', 'R1b1a1a2:CTS12478:28590278G->A', 'R1b1a1a2:L500:18180446C->A', 'R1b1a1a2:PF6475:17986687C->A', 'R1b1a1a2:PF6482:18381735A->G', 'R1b1a1a2:PF6495:20828795G->A', 'R1b1a1a2:PF6509:22190371A->G', 'R1b1a1a:CTS11985:23403749G->A', 'R1b1a1a:FGC57:7759944G->A', 'R1b1a1a:PF6463:16183412C->A', 'R1b1a:PF6263:21159055C->A', 'R1b1:L780:21183643A->G', 'R1b1a1a2a2:CTS1078:7186135G->C', 'R1b1a1a2:CTS3575:15037433C->G', 'R1b1a1a2:CTS8728:18167403C->T', 'R1b1a1a2:M269:22739367T->C', 'R1b1a1a2:PF6497:21222868C->G', 'R1b1a1a:PF6451:14116584T->A', 'R1b1a1a:PF6524:23452965T->C', 'R1b1a:FGC41:7900883C->A', 'R1b1a:L1345:21558298G->T', 'R1b1a1a2:PF6432:8194310C->A', 'R1b1a:FGC35:18407611C->T', 'R1b1a:PF6249:8214827C->T', 'R1b1a1a:L752:18394634T->C']
mitopathos	[{'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}]