| identifier |
I0371 |
| alternative_identifiers |
['SVP11'] |
| country |
Russia |
| continent |
Europe |
| region |
Pontic steppe |
| culture |
Poltavka |
| epoch |
Bronze Age |
| group |
BARu |
| comment |
- |
| latitude |
53.34000015258789 |
| longitude |
50.34000015258789 |
| sex |
M |
| site |
Grachevka, Sok River, Samara |
| site_detail |
Site II |
| mt_hg |
U2d2 |
| ychr_hg |
R1b1a1a2 |
| year_from |
-2872 |
| year_to |
-2583 |
| date_detail |
2872-2583 calBCE (4130±30 BP, Beta-392488) |
| bp |
4130±30 |
| c14_lab_code |
Beta-392488 |
| c14_sample_tag |
True |
| c14_layer_tag |
- |
| avg_coverage |
- |
| sequence_source |
bam |
| reference |
Mathieson et al. 2015. Genome-wide patterns of selection in 230 ancient Eurasians. Nature, 528(7583), 499-503.
(link)
|
| data_link |
https://www.ebi.ac.uk/ena/data/view/PRJEB11450
|
| ychr_snps |
['R:F459:18017528G->T', 'R:M764:21263029G->A', 'R1:CTS2565:14366723C->T', 'R1:L875:16742224A->G', 'R1:P286:17716251C->T', 'R1b1a:CTS4244:15510064T->G', 'R:P224:17285993C->T', 'R1b1a:L754:22889018G->A', 'R1:CTS997:7132713G->A', 'R:CTS5815:16491135C->T', 'R:CTS7876:17722802G->A', 'R:CTS7880:17723850C->T', 'R:F63:7177189G->A', 'R:F295:15594523A->G', 'R:FGC1168:15667208G->C', 'R:M734:18066156C->T', 'R:P227:21409706G->C', 'R1b1:L1349:22722580T->C', 'R1:CTS3123:14674176A->C', 'R1b1a:CTS8612:18109555C->A', 'R1b1a:L1068:21528257T->C', 'R1b:M343:2887824C->A', 'R1b1a1a:CTS5577:16376495A->C', 'R1b1a1a:CTS9018:18617596C->T', 'R1b1a:CTS4764:15803415G->A', 'R1b1a1a2:CTS623:6912992T->G', 'R1b1a1a2:CTS8591:18095336A->C', 'R1b1a1a2:CTS11468:23124367G->T', 'R1b1a1a2:CTS12478:28590278G->A', 'R1b1a1a2:F1794:14522828G->A', 'R1b1a1a2:L265:8149348A->G', 'R1b1a1a2:L500:18180446C->A', 'R1b1a1a2:L773:7220727A->G', 'R1b1a1a2:PF6475:17986687C->A', 'R1b1a1a2:PF6482:18381735A->G', 'R1b1a1a2:PF6495:20828795G->A', 'R1b1a1a2:PF6505:21784286G->A', 'R1b1a1a2:PF6509:22190371A->G', 'R1b1a1a:CTS7941:17755905G->A', 'R1b1a1a:CTS11985:23403749G->A', 'R1b1a1a:FGC57:7759944G->A', 'R1b1a1a:PF6463:16183412C->A', 'R1b1a:A702:10038192G->A', 'R1b1a:CTS7585:17545608G->T', 'R1b1a:PF6263:21159055C->A', 'R1b1:CTS2134:14193384G->A', 'R1b1:CTS3625:15080010C->T', 'R1b1:L780:21183643A->G', 'R1b1:L822:7960019G->A', 'R1b1:M415:9170545C->A']
|
| mitopathos |
[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '16183C', 'position': 16183, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '16189C', 'position': 16189, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Diabetes / Cardiomyopathy /cancer risk / mtDNA copy nbr / Metabolic Syndrome / Melanoma patients']}, {'allele': '5460A', 'position': 5460, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-ND2'], 'diseases': ['AD / PD / LHON']}, {'allele': '8296G', 'position': 8296, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TK'], 'diseases': ['DMDF / MERRF / HCM / epilepsy']}]
|