I0374

FASTA

Metadata

Reference

Data

identifier	I0374
alternative_identifiers	['SVP16', 'NIK7']
country	Russia
continent	Europe
region	Pontic steppe
culture	Poltavka
epoch	Bronze Age
group	BARu
comment	-
latitude	49.970001220703125
longitude	44.66999816894531
sex	M
site	Nikolaevka III, Samara River, Samara
site_detail	-
mt_hg	H13a1a
ychr_hg	R1b1a1a2a2
year_from	-2800
year_to	-2200
date_detail	2800-2200 BCE
bp	-
c14_lab_code	-
c14_sample_tag	-
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Mathieson et al. 2015. Genome-wide patterns of selection in 230 ancient Eurasians. Nature, 528(7583), 499-503. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB11450
ychr_snps	['R:CTS3622:15078469C->G', 'R:F459:18017528G->T', 'R:L1347:22818334C->T', 'R1:CTS2565:14366723C->T', 'R1:CTS5611:16394489T->G', 'R1:P245:8633545T->C', 'R1:P286:17716251C->T', 'R:CTS2426:14300457G->A', 'R:CTS8311:17930099C->A', 'R:M718:17334694G->T', 'R:P280:21843090C->G', 'R1b1a:CTS4244:15510064T->G', 'R:P224:17285993C->T', 'R1b1a:L761:16773870A->G', 'R1:F93:7671535C->T', 'R1:M306:22750583C->A', 'R1:P236:17782178C->G', 'R1:P238:7771131G->A', 'R1:P294:7570822G->C', 'R:CTS7876:17722802G->A', 'R:CTS7880:17723850C->T', 'R:F63:7177189G->A', 'R:F295:15594523A->G', 'R:F652:23631629C->A', 'R:L1225:22733758C->G', 'R:M734:18066156C->T', 'R:P227:21409706G->C', 'R:CTS2913:14561760A->G', 'R:CTS10663:22687547A->T', 'R:F765:24360964G->A', 'R1b1a1a:L502:19020340G->C', 'R1b1a:PF6271:23984056G->A', 'R1b1:L278:18914441C->T', 'R1b:M343:2887824C->A', 'R:F154:8558505T->C', 'R1b1a1a:CTS9018:18617596C->T', 'R1b1a1a2:CTS8591:18095336A->C', 'R1b1a1a2:L773:7220727A->G', 'R1b1a1a2:PF6475:17986687C->A', 'R1b1a1a2:PF6482:18381735A->G', 'R1b1a1a2:PF6509:22190371A->G', 'R1b1a1a:FGC57:7759944G->A', 'R1b1a1a:PF6463:16183412C->A', 'R1b1a:A702:10038192G->A', 'R1b1a:CTS7585:17545608G->T', 'R1b1a:PF6263:21159055C->A', 'R1b1:CTS2134:14193384G->A', 'R1b1:L780:21183643A->G', 'R1b1:L822:7960019G->A', 'R1b1a1a2a2:Z2105:15747432C->A', 'R1b1a1a2:PF6494:20811307G->A', 'R1b1:CTS2229:14226692T->A', 'R1b1a1a2a2:CTS1078:7186135G->C', 'R1b1a1a2a:L23:6753511G->A', 'R1b1a1a2:CTS3575:15037433C->G', 'R1b1a1a2:PF6399:2668456C->T', 'R1b1a1a2:PF6425:7762947T->C', 'R1b1a1a2:PF6430:8070532T->A', 'R1b1a1a2:PF6438:9464078C->T', 'R1b1a1a2:PF6497:21222868C->G', 'R1b1a:CTS8436:18026855G->A', 'R1b1a:CTS9972:19179606A->C', 'R1b1a:FGC41:7900883C->A', 'R1b1a:L1345:21558298G->T', 'R1b1a1a2:PF6432:8194310C->A', 'R1b1a1a:PF6459:15286480G->C', 'R1b1a:FGC35:18407611C->T', 'R1b1a:PF6249:8214827C->T', 'R1b1:CTS5676:16426937C->G']
mitopathos	[{'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}]