I0412

FASTA

Metadata

Reference

Data

identifier	I0412
alternative_identifiers	['LHUE11J.5x42y72z-248', 'Troc5']
country	Spain
continent	Europe
region	Iberia
culture	Iberia_EN
epoch	Neolithic
group	NEIB
comment	-
latitude	42.5
longitude	0.5
sex	M
site	Els Trocs
site_detail	-
mt_hg	N1a1a1
ychr_hg	I2a1b1
year_from	-5308
year_to	-5080
date_detail	5308-5080 calBCE (6249±28 BP, MAMS-16164)
bp	6249±28
c14_lab_code	MAMS-16164
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	831.404541015625
sequence_source	bam
reference	Haak et al. 2015. Massive migration from the steppe was a source for Indo-European languages in Europe. Nature, 522(7555), 207-211. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB8448
ychr_snps	['I2:M438:16638804A->G', 'I:CTS48:2688442T->A', 'I:CTS674:6943522C->T', 'I:CTS1800:14073053G->A', 'I:CTS2387:14286853T->C', 'I:CTS2514:14337364T->C', 'I:CTS2536:14352669G->A', 'I:CTS4088:15389836T->C', 'I:CTS4209:15479899T->A', 'I:CTS4273:15536870C->T', 'I:CTS5764:16471254A->G', 'I:CTS6265:16780748C->G', 'I:CTS7469:17497181C->A', 'I:CTS7502:17511797A->G', 'I:CTS7831:17692855T->A', 'I:CTS8420:18018313C->A', 'I:CTS8963:18582617C->T', 'I:CTS10058:19233673A->G', 'I:CTS10941:22845794A->G', 'I:CTS11540:23156725C->T', 'I:FGC2412:21689728A->G', 'I:FGC2413:8262092C->T', 'I:FGC2415:13835003T->C', 'I:FI2:8382265C->G', 'I:L503:21359407C->G', 'I:L578:8267857G->A', 'I:L758:8536868C->G', 'I:L1197:14974451C->T', 'I:PF3627.2:6662712C->T', 'I:PF3640:7681156T->A', 'I:PF3641:7688470T->C', 'I:PF3661:8484606C->A', 'I:PF3665:8643763A->G', 'I:PF3796:21119888G->T', 'I:PF3833:22485425A->T', 'I:Z16987:22243817A->Ghet', 'I:CTS6231:16751000C->T', 'I:FI4:8873160G->T', 'I2:PF3664:8567995G->A', 'I:CTS3076:14646409C->T', 'I:CTS3517:14986989T->G', 'I:CTS4340:15595624G->A', 'I:CTS5946:16567253A->G', 'I:CTS6497:16939794A->T', 'I:CTS8742:18172947A->G', 'I:CTS8876:18257568G->A', 'I:CTS9860:19104986G->A', 'I:CTS11979:23401471C->T', 'I:FGC2414:21155653C->T', 'I:FGC2416:7642823G->T', 'I:FGC7049:22459264G->A', 'I:L41:19048602G->A', 'I:P38:14484379A->C', 'I:P212:3545070T->A', 'I:PF3797:21130059A->G', 'I:PF3800:21402723A->G', 'I:PF3806:21525069G->A', 'I:PF3814:21839183A->G', 'I:PF3815:21841289G->T', 'I:PF3829:22458740A->G', 'I:PF3836:22525421T->G', 'I2a1b:M423:19096091G->A', 'I2a1:P37.2:14491684T->C', 'I2a:L460:7879415A->C', 'I2:L68:18700150C->T', 'I:CTS646:6926038T->A', 'I:CTS7593:17548890G->A', 'I:CTS9838:19097563T->C', 'I:FI3:8485677C->A', 'I:PF3742:16354708G->A', 'I2a1b:CTS1293:7317227G->A', 'I2a1b:L178:15574052G->A', 'I:CTS1301:7321418C->T', 'I:CTS5650:16415916A->G', 'I:CTS8345:17949402C->G', 'I:FGC7050:22479907A->T', 'I:PF3837:22573702G->A', 'I:CTS7329:17424807C->T', 'I:CTS8545:18078759T->A', 'I:L755:8465165C->T', 'I:CTS1006:7137088C->T', 'I:CTS4745:15793946G->A', 'I:CTS9269:18789763C->T', 'I:PF3670:8984184A->G', 'I:PF3759:17467526G->A', 'I:L751:18394743A->G', 'I:CTS8064:17818847G->A', 'I:CTS9618:18992894T->C', 'I:FGC2417:10051801G->A', 'I2a1b1:L161.1:22513718C->T', 'I2a1b:CTS176:2785672A->G', 'I2a1b:CTS1802:14074218A->T', 'I2a1b:CTS5375:16233135A->G', 'I2a1b:CTS11030:22905944G->C', 'I:Z16985:13804066G->Chet', 'I:CTS70:2707072C->T', 'I:M11064:7244075A->Ghet', 'I:PF3817:21939618G->Ahet']
mitopathos	-