I0419

FASTA

Metadata

Reference

Data

identifier	I0419
alternative_identifiers	['SVP27']
country	Russia
continent	Europe
region	Pontic steppe
culture	Potapovka
epoch	Bronze Age
group	BARu
comment	-
latitude	53.45000076293945
longitude	50.45000076293945
sex	M
site	Utyevka, Samara River, Samara
site_detail	Site VI
mt_hg	U2e1h
ychr_hg	R1a1a1b
year_from	-2200
year_to	-1900
date_detail	2200-1900 BCE
bp	-
c14_lab_code	-
c14_sample_tag	-
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Mathieson et al. 2015. Genome-wide patterns of selection in 230 ancient Eurasians. Nature, 528(7583), 499-503. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB11450
ychr_snps	['R:F459:18017528G->T', 'R1:L875:16742224A->G', 'R:CTS8311:17930099C->A', 'R1:CTS3321:14829196C->T', 'R1a1a:M515:14054623T->A', 'R1a:L145:14138745C->A', 'R1:F93:7671535C->T', 'R1:P233:21166358T->G', 'R1:P236:17782178C->G', 'R:F63:7177189G->A', 'R:F652:23631629C->A', 'R:FGC1168:15667208G->C', 'R:P227:21409706G->C', 'R:CTS2913:14561760A->G', 'R1:P225:15590342G->T', 'R:F154:8558505T->C', 'R1a1a1b:S441:7683058G->A']
mitopathos	[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '16183C', 'position': 16183, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '228A', 'position': 228, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Low VO2max response']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}]