I0423

FASTA

Metadata

Reference

Data

identifier	I0423
alternative_identifiers	['SVP31']
country	Russia
continent	Europe
region	Pontic steppe
culture	Srubnaya
epoch	Bronze Age
group	SRU
comment	Srubnaya_Outlier
latitude	52.540000915527344
longitude	50.5
sex	M
site	Barinovka, Samara River, Samara
site_detail	Site I
mt_hg	J2b1a2a
ychr_hg	R1a1a1b2
year_from	-1850
year_to	-1200
date_detail	1850-1200 BCE
bp	-
c14_lab_code	-
c14_sample_tag	-
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Mathieson et al. 2015. Genome-wide patterns of selection in 230 ancient Eurasians. Nature, 528(7583), 499-503. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB11450
ychr_snps	['R1a1:M459:6906074A->G', 'R:L1347:22818334C->T', 'R:M764:21263029G->A', 'R1:CTS2565:14366723C->T', 'R1:P245:8633545T->C', 'R:CTS8311:17930099C->A', 'R:P285:19267344C->A', 'R1:P234:21117888T->C', 'R1a1:Page65.2:2657176C->T', 'R1a:L62:17891241A->G', 'R1:CTS997:7132713G->A', 'R1:P231:9989615A->G', 'R1:P238:7771131G->A', 'R1:P242:7647357G->A', 'R1:P294:7570822G->C', 'R:CTS6417:16882568T->C', 'R:FGC1168:15667208G->C', 'R:P227:21409706G->C', 'R:CTS11075:22934109A->G', 'R1a1a1b:S441:7683058G->A', 'R1a1a1b2:F992:7552356G->A', 'R:M628:8027859G->C']
mitopathos	[{'allele': '11251G', 'position': 11251, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-ND4'], 'diseases': ['Reduced risk of PD']}, {'allele': '10398G', 'position': 10398, 'status': 'Reported / lineage L & M marker / also hg IJK', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND3'], 'diseases': ['PD protective factor / longevity / altered cell pH / metabolic syndrome / breast cancer risk / Leigh Syndrome risk / ADHD / cognitive decline / SCA2 age of onset / Fuchs endothelial corneal dystrophy']}, {'allele': '13708A', 'position': 13708, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-ND5'], 'diseases': ['LHON / Increased MS risk / higher freq in PD-ADS']}, {'allele': '150T', 'position': 150, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Longevity / Cervical Carcinoma / HPV infection risk']}, {'allele': '15257A', 'position': 15257, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CYB'], 'diseases': ['LHON']}, {'allele': '15812A', 'position': 15812, 'status': 'Reported / Secondary', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CYB'], 'diseases': ['LHON']}, {'allele': '295T', 'position': 295, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Low VO2max response']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '4216C', 'position': 4216, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND1'], 'diseases': ['LHON / Insulin Resistance /possible adaptive high altitude variant / miscarriage']}, {'allele': '489C', 'position': 489, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Low VO2max response']}]