I0424
FASTA
Metadata
Reference
Data
identifier | I0424 |
---|---|
alternative_identifiers | ['SVP32'] |
country | Russia |
continent | Europe |
region | Pontic steppe |
culture | Srubnaya |
epoch | Bronze Age |
group | SRU |
comment | - |
latitude | 53.119998931884766 |
longitude | 48.369998931884766 |
sex | M |
site | Uvarovka, Samara River, Samara |
site_detail | Site I |
mt_hg | T2b4 |
ychr_hg | R1a1a1b2 |
year_from | -1850 |
year_to | -1600 |
date_detail | 1850-1600 BCE |
bp | - |
c14_lab_code | - |
c14_sample_tag | - |
c14_layer_tag | - |
avg_coverage | - |
sequence_source | bam |
reference | Mathieson et al. 2015. Genome-wide patterns of selection in 230 ancient Eurasians. Nature, 528(7583), 499-503. (link) |
data_link | https://www.ebi.ac.uk/ena/data/view/PRJEB11450 |
ychr_snps | ['R:F459:18017528G->T', 'R:L1347:22818334C->T', 'R:M764:21263029G->A', 'R1:CTS2565:14366723C->T', 'R:CTS2426:14300457G->A', 'R1:P234:21117888T->C', 'R:P224:17285993C->T', 'R1a1a:M198:15030752C->T', 'R1a:L62:17891241A->G', 'R1a:L145:14138745C->A', 'R1a:L146:23473201T->A', 'R1:CTS997:7132713G->A', 'R1:M173:15026424A->C', 'R1:P236:17782178C->G', 'R1:P294:7570822G->C', 'R:CTS7880:17723850C->T', 'R:FGC1168:15667208G->C', 'R:F154:8558505T->C', 'R1a1a1b:S224:8245045C->T', 'R1a1a1b2:F992:7552356G->A'] |
mitopathos | [{'allele': '11251G', 'position': 11251, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-ND4'], 'diseases': ['Reduced risk of PD']}, {'allele': '15928A', 'position': 15928, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-TT'], 'diseases': ['Multiple Sclerosis / idiopathic repeat miscarriage / AD protection']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '4917G', 'position': 4917, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND2'], 'diseases': ['LHON / Insulin Resistance / AMD / NRTI-PN']}] |
I0424