| identifier |
I0424 |
| alternative_identifiers |
['SVP32'] |
| country |
Russia |
| continent |
Europe |
| region |
Pontic steppe |
| culture |
Srubnaya |
| epoch |
Bronze Age |
| group |
SRU |
| comment |
- |
| latitude |
53.119998931884766 |
| longitude |
48.369998931884766 |
| sex |
M |
| site |
Uvarovka, Samara River, Samara |
| site_detail |
Site I |
| mt_hg |
T2b4 |
| ychr_hg |
R1a1a1b2 |
| year_from |
-1850 |
| year_to |
-1600 |
| date_detail |
1850-1600 BCE |
| bp |
- |
| c14_lab_code |
- |
| c14_sample_tag |
- |
| c14_layer_tag |
- |
| avg_coverage |
- |
| sequence_source |
bam |
| reference |
Mathieson et al. 2015. Genome-wide patterns of selection in 230 ancient Eurasians. Nature, 528(7583), 499-503.
(link)
|
| data_link |
https://www.ebi.ac.uk/ena/data/view/PRJEB11450
|
| ychr_snps |
['R:F459:18017528G->T', 'R:L1347:22818334C->T', 'R:M764:21263029G->A', 'R1:CTS2565:14366723C->T', 'R:CTS2426:14300457G->A', 'R1:P234:21117888T->C', 'R:P224:17285993C->T', 'R1a1a:M198:15030752C->T', 'R1a:L62:17891241A->G', 'R1a:L145:14138745C->A', 'R1a:L146:23473201T->A', 'R1:CTS997:7132713G->A', 'R1:M173:15026424A->C', 'R1:P236:17782178C->G', 'R1:P294:7570822G->C', 'R:CTS7880:17723850C->T', 'R:FGC1168:15667208G->C', 'R:F154:8558505T->C', 'R1a1a1b:S224:8245045C->T', 'R1a1a1b2:F992:7552356G->A']
|
| mitopathos |
[{'allele': '11251G', 'position': 11251, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-ND4'], 'diseases': ['Reduced risk of PD']}, {'allele': '15928A', 'position': 15928, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-TT'], 'diseases': ['Multiple Sclerosis / idiopathic repeat miscarriage / AD protection']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '4917G', 'position': 4917, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND2'], 'diseases': ['LHON / Insulin Resistance / AMD / NRTI-PN']}]
|